Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   C6376_RS16265 Genome accession   NZ_CP028369
Coordinates   3639693..3641621 (-) Length   642 a.a.
NCBI ID   WP_107444078.1    Uniprot ID   -
Organism   Streptomyces sp. P3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3634693..3646621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6376_RS16250 (C6376_16240) - 3635003..3636268 (+) 1266 WP_107444076.1 NAD(P)/FAD-dependent oxidoreductase -
  C6376_RS16255 (C6376_16245) dnaG 3636298..3638196 (+) 1899 WP_107444077.1 DNA primase -
  C6376_RS16260 (C6376_16250) - 3638251..3639549 (+) 1299 WP_254075959.1 RNA polymerase sigma factor -
  C6376_RS16265 (C6376_16255) rcrQ 3639693..3641621 (-) 1929 WP_107444078.1 ABC transporter ATP-binding protein Regulator
  C6376_RS16270 (C6376_16260) rcrP 3641621..3643354 (-) 1734 WP_107444079.1 ABC transporter ATP-binding protein Regulator
  C6376_RS16275 (C6376_16265) - 3643518..3644972 (-) 1455 WP_107444080.1 FGGY-family carbohydrate kinase -
  C6376_RS16280 (C6376_16270) - 3645077..3645382 (-) 306 WP_057574869.1 hypothetical protein -
  C6376_RS43840 - 3646157..3646303 (+) 147 WP_159083210.1 hypothetical protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69601.94 Da        Isoelectric Point: 5.5847

>NTDB_id=240857 C6376_RS16265 WP_107444078.1 3639693..3641621(-) (rcrQ) [Streptomyces sp. P3]
MAGPMGRMMAGGGPENRSLDFKVSGRRLLAQFKPERLTLYAMLFCVVLSVGLNVVGPKILGRATDLVFAGIVGREMPAGA
SKEQVLDSMRDRGDSSVADMLRSTDFTPGKGIDFGAVGEVLLVAVGVFLVAGLLMAVATRLVNKTVNRTMFRMREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTIIGVLAMMFWVSWLLALVALVTVPLSAVVATRVGK
RSQPHFVQQWRSTGKLNAHIEEMYTGHNLVKVFGRQQQSAEQFAEQNDALYEAGFKAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFEILDAEEQEADPVTAVRPEELRGRVALE
GVSFRYDPQKPLIEDLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSGGRITLDGVDIARMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPTILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHSDLLSADGAYARLYKAQFAEAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=240857 C6376_RS16265 WP_107444078.1 3639693..3641621(-) (rcrQ) [Streptomyces sp. P3]
ATGGCCGGGCCCATGGGGCGCATGATGGCCGGCGGAGGTCCCGAGAACCGCTCGCTGGACTTCAAGGTGTCCGGCAGGCG
GCTGCTCGCCCAGTTCAAGCCGGAACGGCTGACGCTCTACGCGATGCTGTTCTGCGTGGTGCTGAGCGTCGGCCTCAACG
TGGTCGGACCGAAGATCCTCGGCCGGGCCACCGACCTCGTCTTCGCGGGCATCGTCGGCCGGGAGATGCCGGCCGGGGCG
TCCAAGGAGCAGGTCCTCGACTCGATGCGGGACCGCGGTGACAGCAGTGTCGCCGACATGCTCAGGAGCACCGACTTCAC
GCCCGGCAAGGGCATCGACTTCGGCGCGGTCGGCGAGGTCCTGCTGGTCGCGGTCGGGGTGTTCCTCGTCGCCGGGCTGC
TGATGGCGGTCGCGACGCGCCTGGTGAACAAGACCGTCAACCGCACGATGTTCCGGATGCGCGAGGACGTGCAGACGAAG
CTGTCGCGGCTTCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGCGAGGTGCTGTCCCGCGCGACCAACGACATCGACAA
CATCGGGCAGACCCTCCAGCAGTCGATGGGGCAGCTCATCAACTCGCTGCTGACGATCATCGGCGTGCTGGCGATGATGT
TCTGGGTGTCGTGGCTGCTGGCGCTGGTGGCCCTCGTCACCGTGCCGCTGTCGGCGGTCGTCGCCACCCGCGTGGGCAAA
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGCTCCACCGGCAAGCTCAACGCGCACATCGAGGAGATGTACACCGGCCA
CAACCTGGTGAAGGTGTTCGGCCGTCAGCAGCAGTCGGCCGAGCAGTTCGCCGAGCAGAACGACGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGTGGTGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTCAACTACGTGCTGGTGGCG
GTGGTCGGCGGACTGCGCGTCGCGTCGGGTTCGCTGTCCATCGGCGACGTGCAGGCGTTCATCCAGTACTCCCGCCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTGGCCTCGGCCGAGCGGGTCTTCGAGA
TCCTGGACGCGGAAGAGCAGGAGGCGGACCCGGTGACCGCCGTGCGGCCCGAGGAACTGCGCGGACGGGTGGCGCTGGAG
GGCGTCTCCTTCCGCTACGACCCGCAGAAGCCGCTGATCGAGGACCTGTCGCTGTCGGTGGAGCCCGGCCACACGGTCGC
CATCGTCGGTCCGACGGGCGCCGGCAAGACGACGCTGGTGAACCTGCTGATGCGGTTCTACGACGTCTCCGGCGGACGCA
TCACCCTCGACGGCGTCGACATAGCGCGGATGTCCCGTGACGAGCTGCGCGCCGGGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCGTACGGCGCGTCGCGGGAGGTCACCCGCGGCGAGATCGAGGAGGC
GGCACGGGCCGCGCACGCGGACCGGTTCGTCCGCACCCTGCCCGACGGCTACGACACCGTGATCGACGACGAGGGCAGCG
GGGTCAGCGCGGGTGAGAAGCAGTTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGACGATCCTGGTGCTCGACGAG
GCCACCAGCTCCGTCGACACCCGCACCGAGGTCCTGATCCAGAAGGCGATGGCGAAGCTGGCCCACGGGCGCACGTCGTT
CGTCATCGCGCACCGGCTGTCGACCATCCGGGACGCCGACACGATCCTGGTGATGGAGAACGGCTCGATCGTCGAGCAGG
GCGCGCACAGCGACCTGCTGTCGGCGGACGGGGCCTACGCCCGGTTGTACAAGGCGCAGTTCGCGGAGGCGGTGGCGGAG
GTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(41-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.872

96.417

0.394

Multiple sequence alignment