Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   C6376_RS12610 Genome accession   NZ_CP028369
Coordinates   2795733..2796731 (+) Length   332 a.a.
NCBI ID   WP_107443500.1    Uniprot ID   -
Organism   Streptomyces sp. P3     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2790733..2801731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6376_RS12585 (C6376_12585) - 2790881..2791531 (+) 651 WP_107443496.1 TetR/AcrR family transcriptional regulator -
  C6376_RS12590 (C6376_12590) - 2791784..2793331 (+) 1548 WP_107443497.1 MFS transporter -
  C6376_RS12595 (C6376_12595) - 2793430..2793945 (-) 516 WP_107448931.1 MarR family winged helix-turn-helix transcriptional regulator -
  C6376_RS12600 (C6376_12600) - 2794095..2794904 (+) 810 WP_107443498.1 dioxygenase -
  C6376_RS12605 (C6376_12605) - 2795005..2795544 (-) 540 WP_107443499.1 GNAT family N-acetyltransferase -
  C6376_RS12610 (C6376_12610) rpoS 2795733..2796731 (+) 999 WP_107443500.1 RNA polymerase sigma factor RpoD/SigA Regulator
  C6376_RS46385 (C6376_12615) - 2797504..2797896 (+) 393 Protein_2451 TetR family transcriptional regulator -
  C6376_RS12625 (C6376_12625) - 2798478..2799560 (-) 1083 WP_107443501.1 YafY family protein -
  C6376_RS12630 (C6376_12630) - 2799622..2801214 (+) 1593 WP_254075924.1 MFS transporter -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37192.87 Da        Isoelectric Point: 4.9765

>NTDB_id=240848 C6376_RS12610 WP_107443500.1 2795733..2796731(+) (rpoS) [Streptomyces sp. P3]
MATRAVARRKSATGETSGAARSVRAHGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVFAQQVLDGEEESRAD
ASREEFEALVAESERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNRENGRDPEPAEIAAELGSTPERVTDVLDWARDPVSLNMSVDDQGETQF
GDLLEDTSAVSPEQSVLTLLRSEELDGLIDRLDPRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFEAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=240848 C6376_RS12610 WP_107443500.1 2795733..2796731(+) (rpoS) [Streptomyces sp. P3]
ATGGCAACCCGTGCCGTCGCCCGCCGCAAGTCCGCCACCGGCGAGACGAGCGGCGCGGCCCGCAGTGTTCGCGCCCATGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTATCTCGACGAGATCGCGCGCACACCCCTGCTCGACGCCGCGAAGG
AAGTCGAGCTGTCCCAGATCATCGAGGCCGGCGTGTTCGCGCAACAGGTCCTCGACGGCGAGGAGGAGTCCAGGGCGGAC
GCCTCCCGCGAGGAGTTCGAGGCTCTGGTCGCGGAAAGCGAGCGGGCCAAGGACGTATTCATCCGTTCCAACCTCCGCCT
GGTGGTCGCGGTCGCCCGCCGCTACCCCCGTAGCGGGCTTCCCCTCCTCGACCTCATCCAGGAGGGCAACGCGGGCCTGG
TGCGCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCCACGTACGCGACCTGGTGGATCCGTCAGGCCATC
ACCCGGTCGATAGCGGACCAGTCGCGCACGATCAGGCTGCCCGTCCACCTGGTGGAGGAACTCGGCCGCATCCGCCGCGT
ACAGCGCGAGTTCAACCGGGAGAACGGCCGTGACCCGGAGCCCGCAGAGATCGCCGCGGAGCTCGGCTCCACACCGGAGC
GCGTCACCGACGTCCTGGACTGGGCCCGTGACCCGGTCTCGCTGAACATGTCGGTCGACGACCAGGGCGAGACACAGTTC
GGCGACCTGCTGGAGGACACTTCCGCGGTCTCGCCCGAGCAGTCCGTCCTCACCCTGCTGCGCAGCGAGGAACTGGACGG
TCTGATCGACCGTCTCGACCCGCGCACCGCCTCCATCATCAAGATGCGCTACGGCATCGACGACGGCCGCGAGCGCACTC
TGACCGAGGTCGGCAAGGAGCACGGCCTGACGAGGGAGCGCATTCGTCAGATCGAGAAGCACGCCCTGCTGGAACTGAAG
AAGCTGGCCCGCGACACGGGCTTCGAGGCGGCGGCGTAG

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70 region 3 (Sigma70_r3)

(179-255)

Sigma-70, region 4 (Sigma70_r4)

(269-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

39.241

95.181

0.373