Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   C6376_RS09550 Genome accession   NZ_CP028369
Coordinates   2142184..2143305 (+) Length   373 a.a.
NCBI ID   WP_107443029.1    Uniprot ID   -
Organism   Streptomyces sp. P3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2137184..2148305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6376_RS09540 (C6376_09540) dnaN 2139922..2141052 (+) 1131 WP_057576638.1 DNA polymerase III subunit beta -
  C6376_RS09545 (C6376_09545) gnd 2141256..2142131 (+) 876 WP_107443028.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  C6376_RS09550 (C6376_09550) recF 2142184..2143305 (+) 1122 WP_107443029.1 DNA replication/repair protein RecF Machinery gene
  C6376_RS09555 (C6376_09555) - 2143302..2143841 (+) 540 WP_057576640.1 DUF721 domain-containing protein -
  C6376_RS09560 (C6376_09560) gyrB 2144252..2146312 (+) 2061 WP_216825582.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 40888.58 Da        Isoelectric Point: 7.5865

>NTDB_id=240844 C6376_RS09550 WP_107443029.1 2142184..2143305(+) (recF) [Streptomyces sp. P3]
MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGCDRAIVRAQVRQGERQ
QLIELELNPGKANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQ
RNTLLKSAALARRHGGRSMDLSTLEVWDQHLARVGAELLARRLDLVAALQPLADKAYEQLAPGGGPVALEYRPSAPGEAH
TRDDLYEQLTAALAESRKQEIERGVTLVGPHRDDLLLKLGQLPAKGYASHGESWSYALALRLASYDLLRAEGNEPVLVLD
DVFAELDARRRERLAELVAPGEQVLVTAAVDDDVPHVLAGARYTVSEGTVVRV

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=240844 C6376_RS09550 WP_107443029.1 2142184..2143305(+) (recF) [Streptomyces sp. P3]
ATGCACGTCACGCATCTGTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAAGTTCCGCTCGACCCGGGCGTCACCGC
TTTCGTGGGCCCCAACGGGCAGGGCAAGACGAACCTCGTCGAGGCCGTCGGCTACCTCGCCACCCTCGGCAGCCACCGGG
TCTCCTCGGACGCGCCCCTGGTCCGCATGGGCTGCGACCGCGCGATCGTCCGGGCGCAGGTCAGACAGGGCGAGCGGCAG
CAGCTGATCGAACTGGAGCTGAACCCGGGCAAGGCCAACCGGGCCCGCATCAACAGGTCGTCGCAGGTCAGACCCCGTGA
CGTGCTGGGCATCGTACGGACCGTGCTGTTCGCGCCGGAGGATCTCGCGCTGGTGAAGGGCGACCCCGGCGAGCGTCGGC
GGTTCCTCGACGAGCTGATCACCGCGCGCTCCCCGCGGATGGCGGGGGTGCGCTCGGACTACGAGCGGGTGCTCAAGCAG
CGCAACACGCTGTTGAAGTCCGCCGCGCTCGCGCGCCGGCACGGCGGCCGTTCCATGGACCTGTCGACGCTCGAGGTGTG
GGACCAGCACCTCGCGCGCGTGGGCGCCGAGCTGTTGGCCCGGCGCCTGGACCTGGTCGCCGCCCTCCAGCCGCTCGCCG
ACAAGGCGTACGAACAGCTGGCGCCCGGCGGCGGGCCCGTGGCCCTGGAGTACAGGCCGTCGGCGCCGGGCGAGGCGCAC
ACGCGTGACGACCTCTACGAACAGCTGACGGCCGCCCTCGCGGAGTCCCGCAAGCAGGAGATCGAGCGGGGCGTCACCCT
CGTCGGGCCGCATCGGGACGACCTTCTGCTCAAGCTCGGACAACTGCCCGCCAAGGGGTACGCCTCGCACGGCGAGTCCT
GGTCGTACGCGCTGGCGCTGCGGCTGGCCTCGTACGACCTGTTGCGGGCGGAGGGCAACGAGCCGGTCCTGGTGCTGGAC
GACGTCTTCGCCGAACTGGACGCCCGCCGGCGGGAGCGGCTGGCGGAGCTGGTCGCGCCCGGCGAGCAGGTGCTGGTGAC
GGCCGCGGTCGACGACGACGTGCCCCATGTGCTCGCCGGAGCGCGGTACACGGTGTCCGAGGGGACGGTGGTGCGCGTAT
GA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.136

94.906

0.362