Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   CHN49_RS26080 Genome accession   NZ_CP022561
Coordinates   5562768..5563169 (-) Length   133 a.a.
NCBI ID   WP_010955560.1    Uniprot ID   -
Organism   Pseudomonas putida strain B4     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5557768..5568169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHN49_RS26065 (CHN49_25625) - 5559732..5561756 (-) 2025 WP_223843618.1 methyl-accepting chemotaxis protein -
  CHN49_RS26070 (CHN49_25630) - 5561804..5562358 (-) 555 WP_003249330.1 chemotaxis protein CheW -
  CHN49_RS26075 (CHN49_25635) pilH 5562355..5562720 (-) 366 WP_003249327.1 twitching motility response regulator PilH -
  CHN49_RS26080 (CHN49_25640) pilG 5562768..5563169 (-) 402 WP_010955560.1 response regulator Regulator
  CHN49_RS26085 (CHN49_25645) gshB 5563408..5564361 (+) 954 WP_121784159.1 glutathione synthase -
  CHN49_RS26090 (CHN49_25650) - 5564453..5565358 (+) 906 WP_003249319.1 energy transducer TonB -
  CHN49_RS26095 (CHN49_25655) - 5565523..5566092 (+) 570 WP_003249318.1 YqgE/AlgH family protein -
  CHN49_RS26100 (CHN49_25660) ruvX 5566092..5566517 (+) 426 WP_003249316.1 Holliday junction resolvase RuvX -
  CHN49_RS26105 (CHN49_25665) pyrR 5566567..5567085 (+) 519 WP_003249313.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  CHN49_RS26110 (CHN49_25670) - 5567098..5568102 (+) 1005 WP_003249311.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14602.85 Da        Isoelectric Point: 6.4772

>NTDB_id=240806 CHN49_RS26080 WP_010955560.1 5562768..5563169(-) (pilG) [Pseudomonas putida strain B4]
MEQPLKVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIVDHQPSIIFVDVLMPRLDGYQTCAVIKHNSAFKDTP
VILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAIRAHVPGFAAPQQHAP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=240806 CHN49_RS26080 WP_010955560.1 5562768..5563169(-) (pilG) [Pseudomonas putida strain B4]
ATGGAACAACCCCTGAAGGTGATGGTGATCGACGATTCCCGCACGATCCGCCGCACCGCGCAGATGTTGCTCGGTGAAGC
GGGCTGCGAGGTGATCACCGCCAGCGATGGCTTCGATGCCCTGGCCAAGATCGTCGACCATCAGCCCAGTATCATTTTCG
TCGATGTGCTGATGCCACGCCTGGACGGCTACCAGACCTGCGCGGTAATCAAGCACAACAGTGCCTTCAAGGACACCCCG
GTTATCCTGCTGTCGTCCCGCGATGGCCTGTTCGACAAGGCCCGCGGCCGGGTGGTCGGTTCCGATCAGTTCCTGACCAA
ACCGTTCAGCAAGGAAGAACTGCTCGACGCGATCCGCGCCCATGTGCCCGGGTTTGCCGCACCTCAACAACACGCACCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70

90.226

0.632

Multiple sequence alignment