Detailed information NTG0024078

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: BLI_RS14250
• Genome accession: NC_006322
• Coordinates: 2767668..2768933 (+)
• Length: 421 a.a.
• NCBI ID: WP_011198157.1
• Uniprot ID: Q65GR6
• Organism: Bacillus licheniformis DSM 13 = ATCC 14580
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2762668..2773933

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BLI_RS14230 (BLi02874)	-	2763549..2764199 (-)	651	WP_003183935.1	tetratricopeptide repeat protein	-
BLI_RS14235 (BLi02875)	mnmA	2764293..2765411 (-)	1119	WP_003183938.1	tRNA 2-thiouridine(34) synthase MnmA	-
BLI_RS14240 (BLi02876)	-	2765517..2766656 (-)	1140	WP_009327778.1	cysteine desulfurase family protein	-
BLI_RS14245 (BLi02877)	cymR	2766677..2767093 (-)	417	WP_009327777.1	cysteine metabolism transcriptional regulator CymR	-
BLI_RS14250 (BLi02878)	rarA	2767668..2768933 (+)	1266	WP_011198157.1	replication-associated recombination protein A	Machinery gene
BLI_RS14255 (BLi02879)	-	2769014..2769778 (-)	765	WP_003183947.1	tRNA threonylcarbamoyladenosine dehydratase	-
BLI_RS14260 (BLi02881)	aspS	2770198..2771976 (-)	1779	WP_003183949.1	aspartate--tRNA ligase	-
BLI_RS14265 (BLi02882)	hisS	2771991..2773265 (-)	1275	WP_003183951.1	histidine--tRNA ligase	-
BLI_RS22435 (BLi02883)	-	2773640..2773804 (-)	165	WP_003183953.1	YrzK family protein	-

Sequence

Protein

• Length: 421 a.a.
• Molecular weight: 46344.32 Da
• Isoelectric Point: 7.6230

>NTDB_id=24078 BLI_RS14250 WP_011198157.1 2767668..2768933(+) (rarA) [Bacillus licheniformis DSM 13 = ATCC 14580]
MKPLAFRMRPTKIEEVLGQDHLVGEGKIIHRMVQAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVINNKKDME
AIAAEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIIMIGATTANPYHAINPAIRSRTQIFELHPLDPEQIKTAIKR
ALEDKHRGLGSYDVAVDDEALDHLARGCGGDVRSALNALELAVLSTKENSEGAIRITLEIAEECLQKKSFVHDKDGDAHY
DVISAFQKSIRGSDVNAALHYMARLIEAGDLESLARRLLVIAYEDVGLASPQAGGRTLQAIQTAERIGFPEARIPLANAV
IELCLSPKSNSAILAVDEALSDVRSGKIGDVPNHLKDAHYKGAAELGRGVEYKYPHDYENGWVKQQYLPDPLKNKVYYQP
KQTGKFELALKQVYDKLMKQK

Nucleotide

• Length: 1266 bp

>NTDB_id=24078 BLI_RS14250 WP_011198157.1 2767668..2768933(+) (rarA) [Bacillus licheniformis DSM 13 = ATCC 14580]
ATGAAACCACTCGCATTTCGAATGCGCCCTACAAAAATCGAAGAGGTTCTCGGCCAGGATCACCTGGTCGGGGAAGGAAA
GATCATTCATCGGATGGTGCAGGCCAAACACCTTTCATCGATGATTCTGTACGGCCCCCCGGGCATCGGCAAAACGTCGA
TCGCCACGGCGATTGCCGGCAGCACGAGCATCGCTTTCCGAAAGCTGAACGCAGTCATCAATAATAAAAAGGATATGGAA
GCCATTGCCGCCGAAGCAAAAATGTCGGGGCAGGTTATCTTAATCCTTGATGAGGTGCACCGGCTTGACAAAGGCAAGCA
GGACTTTCTCCTTCCGTATTTGGAAAACGGCATGATTATCATGATCGGGGCGACGACAGCCAACCCGTACCATGCGATCA
ATCCGGCGATCAGAAGCAGAACGCAGATTTTCGAGCTGCATCCGTTAGACCCTGAACAAATCAAAACGGCCATTAAACGG
GCGCTTGAAGATAAACACAGAGGCCTCGGTTCGTATGACGTTGCCGTCGATGATGAGGCGCTTGACCATTTGGCCCGCGG
CTGCGGCGGAGATGTCCGCTCAGCTTTGAATGCGCTCGAACTTGCCGTATTGTCCACAAAGGAAAACAGTGAGGGAGCGA
TACGCATTACATTGGAAATCGCAGAAGAATGCCTGCAGAAAAAAAGCTTTGTCCATGACAAAGATGGAGACGCGCATTAT
GATGTCATTTCCGCCTTCCAAAAATCAATCAGAGGCTCTGATGTCAATGCTGCACTGCACTACATGGCAAGGCTTATTGA
AGCGGGGGATTTGGAAAGCCTTGCACGGAGGCTGCTTGTTATCGCCTATGAGGATGTCGGGCTGGCGAGTCCGCAGGCTG
GTGGAAGAACGCTTCAAGCCATTCAAACGGCGGAACGAATCGGATTTCCGGAAGCGAGGATTCCGCTGGCCAACGCCGTG
ATTGAGCTCTGCCTGTCTCCTAAATCGAACTCGGCGATCCTTGCAGTTGACGAAGCGCTGTCAGACGTCCGCTCCGGAAA
GATCGGCGATGTGCCGAACCATTTAAAGGACGCCCATTACAAAGGAGCCGCTGAGCTTGGCAGAGGTGTGGAATACAAAT
ATCCGCACGATTACGAGAACGGCTGGGTCAAACAGCAGTACCTGCCTGATCCGCTGAAAAACAAAGTTTACTATCAGCCG
AAGCAGACGGGAAAATTTGAACTCGCACTGAAACAAGTATACGACAAGCTGATGAAACAAAAATAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-127)

• AAA C-terminal domain (AAA_assoc_2) (172-251)

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-416)

3D structure

• AlphaFold DB: Q65GR6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	85.748	100	0.857