Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   CHR26_RS09930 Genome accession   NZ_CP022560
Coordinates   2118559..2118960 (+) Length   133 a.a.
NCBI ID   WP_016501972.1    Uniprot ID   A0AAU8S4N7
Organism   Pseudomonas putida strain B1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2113559..2123960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHR26_RS09900 (CHR26_09825) - 2113739..2114743 (-) 1005 WP_008099987.1 aspartate carbamoyltransferase catalytic subunit -
  CHR26_RS09905 (CHR26_09830) pyrR 2114756..2115274 (-) 519 WP_016489547.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  CHR26_RS09910 (CHR26_09835) ruvX 2115324..2115749 (-) 426 WP_016489546.1 Holliday junction resolvase RuvX -
  CHR26_RS09915 (CHR26_09840) - 2115749..2116318 (-) 570 WP_016489545.1 YqgE/AlgH family protein -
  CHR26_RS09920 (CHR26_09845) - 2116456..2117361 (-) 906 WP_016489544.1 energy transducer TonB -
  CHR26_RS09925 (CHR26_09850) gshB 2117453..2118406 (-) 954 WP_145913598.1 glutathione synthase -
  CHR26_RS09930 (CHR26_09855) pilG 2118559..2118960 (+) 402 WP_016501972.1 PleD family two-component system response regulator Regulator
  CHR26_RS09935 (CHR26_09860) pilH 2119008..2119373 (+) 366 WP_016489541.1 twitching motility response regulator PilH -
  CHR26_RS09940 (CHR26_09865) - 2119370..2119924 (+) 555 WP_016489540.1 chemotaxis protein CheW -
  CHR26_RS09945 (CHR26_09870) - 2119972..2121996 (+) 2025 WP_224372594.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14601.87 Da        Isoelectric Point: 6.4772

>NTDB_id=240779 CHR26_RS09930 WP_016501972.1 2118559..2118960(+) (pilG) [Pseudomonas putida strain B1]
MEQPLKVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIVDHQPSIIFVDVLMPRLDGYQTCAVIKHNSAFKDTP
VILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAIRAHVPGFTAPPQHAP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=240779 CHR26_RS09930 WP_016501972.1 2118559..2118960(+) (pilG) [Pseudomonas putida strain B1]
ATGGAACAACCCCTGAAGGTGATGGTGATCGACGATTCGCGCACGATCCGCCGCACCGCCCAGATGTTGCTCGGTGAAGC
GGGCTGCGAGGTGATCACCGCCAGCGATGGCTTCGATGCCCTGGCCAAGATCGTCGACCACCAGCCCAGCATCATCTTCG
TTGATGTGCTGATGCCGCGCCTGGACGGCTACCAGACCTGCGCCGTGATCAAGCACAACAGTGCTTTCAAGGACACCCCG
GTGATCCTGCTGTCGTCGCGCGATGGCCTGTTCGACAAGGCCCGCGGCCGGGTGGTCGGCTCTGATCAGTTCCTGACCAA
ACCGTTCAGCAAGGAAGAGCTGCTCGACGCGATCCGCGCCCACGTGCCCGGGTTTACCGCGCCTCCACAACACGCACCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70

90.226

0.632

Multiple sequence alignment