Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   CF389_RS14380 Genome accession   NZ_CP022556
Coordinates   2921276..2922388 (-) Length   370 a.a.
NCBI ID   WP_004392909.1    Uniprot ID   -
Organism   Bacillus velezensis strain NJAU-Z9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2916276..2927388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF389_RS14365 gyrA 2916362..2918821 (-) 2460 WP_004392898.1 DNA gyrase subunit A -
  CF389_RS14370 gyrB 2919037..2920953 (-) 1917 WP_094760626.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  CF389_RS14375 remB 2921013..2921258 (-) 246 WP_004392908.1 extracellular matrix regulator RemB -
  CF389_RS14380 recF 2921276..2922388 (-) 1113 WP_004392909.1 DNA replication/repair protein RecF Machinery gene
  CF389_RS14385 rlbA 2922404..2922619 (-) 216 WP_004392910.1 ribosome maturation protein RlbA -
  CF389_RS14390 dnaN 2922754..2923890 (-) 1137 WP_004392911.1 DNA polymerase III subunit beta -
  CF389_RS14395 dnaA 2924075..2925415 (-) 1341 WP_004392913.1 chromosomal replication initiator protein DnaA -
  CF389_RS14400 rpmH 2926036..2926170 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  CF389_RS14405 rnpA 2926325..2926675 (+) 351 WP_004392944.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42455.38 Da        Isoelectric Point: 7.0882

>NTDB_id=240745 CF389_RS14380 WP_004392909.1 2921276..2922388(-) (recF) [Bacillus velezensis strain NJAU-Z9]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGNPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVARRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=240745 CF389_RS14380 WP_004392909.1 2921276..2922388(-) (recF) [Bacillus velezensis strain NJAU-Z9]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAGGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAACCCTCAGGTGAGGAGAAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAGACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACTTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTCTGAAGCTGGCTGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACGAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.054

100

0.941

Multiple sequence alignment