Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CF389_RS14150 Genome accession   NZ_CP022556
Coordinates   2879577..2879867 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain NJAU-Z9     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2874577..2884867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF389_RS14135 - 2874800..2876125 (-) 1326 WP_088005470.1 G5 and 3D domain-containing protein -
  CF389_RS14140 - 2876260..2877027 (-) 768 WP_004264700.1 TatD family hydrolase -
  CF389_RS14145 metG 2877103..2879094 (-) 1992 WP_004264704.1 methionine--tRNA ligase -
  CF389_RS14150 abrB 2879577..2879867 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  CF389_RS14155 rsmI 2879917..2880798 (-) 882 WP_014304192.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  CF389_RS14160 - 2880773..2881072 (-) 300 WP_004264714.1 GIY-YIG nuclease family protein -
  CF389_RS14165 - 2881059..2881802 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  CF389_RS14170 yabA 2881863..2882222 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  CF389_RS14175 ricT 2882237..2883064 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  CF389_RS14180 holB 2883067..2884056 (-) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  CF389_RS14185 - 2884068..2884508 (-) 441 WP_004264730.1 YaaR family protein -
  CF389_RS14190 darA 2884521..2884850 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=240743 CF389_RS14150 WP_169510469.1 2879577..2879867(+) (abrB) [Bacillus velezensis strain NJAU-Z9]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=240743 CF389_RS14150 WP_169510469.1 2879577..2879867(+) (abrB) [Bacillus velezensis strain NJAU-Z9]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment