Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   CF389_RS12630 Genome accession   NZ_CP022556
Coordinates   2600746..2601183 (+) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain NJAU-Z9     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2595746..2606183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF389_RS12615 - 2598604..2598966 (-) 363 WP_003156585.1 winged helix-turn-helix transcriptional regulator -
  CF389_RS12620 hxlA 2599198..2599833 (+) 636 WP_003156586.1 3-hexulose-6-phosphate synthase -
  CF389_RS12625 hxlB 2599830..2600387 (+) 558 WP_003156587.1 6-phospho-3-hexuloisomerase -
  CF389_RS12630 nucA/comI 2600746..2601183 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  CF389_RS12635 nin/comJ 2601205..2601603 (+) 399 WP_003156589.1 competence protein ComJ Regulator
  CF389_RS12640 - 2601644..2601862 (-) 219 Protein_2439 family 1 glycosylhydrolase -
  CF389_RS19815 - 2601861..2602139 (-) 279 WP_107890409.1 family 1 glycosylhydrolase -
  CF389_RS12645 - 2602081..2602356 (-) 276 WP_375140154.1 YckD family protein -
  CF389_RS12650 - 2602473..2602907 (-) 435 WP_094760582.1 RDD family protein -
  CF389_RS12655 - 2602922..2604058 (-) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  CF389_RS12660 - 2604123..2605325 (-) 1203 WP_003156595.1 GTP-binding protein -
  CF389_RS19595 - 2605473..2605600 (+) 128 Protein_2445 hypothetical protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=240738 CF389_RS12630 WP_003156588.1 2600746..2601183(+) (nucA/comI) [Bacillus velezensis strain NJAU-Z9]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=240738 CF389_RS12630 WP_003156588.1 2600746..2601183(+) (nucA/comI) [Bacillus velezensis strain NJAU-Z9]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment