Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   CF389_RS07305 Genome accession   NZ_CP022556
Coordinates   1570868..1571464 (-) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain NJAU-Z9     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1565868..1576464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF389_RS07280 mobB 1566244..1566765 (-) 522 WP_003154581.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  CF389_RS07285 glp 1566726..1568018 (-) 1293 WP_003154583.1 gephyrin-like molybdotransferase Glp -
  CF389_RS07290 - 1568036..1569055 (-) 1020 WP_003154586.1 molybdopterin-synthase adenylyltransferase MoeB -
  CF389_RS07295 - 1569107..1569709 (-) 603 WP_003154587.1 molybdenum cofactor guanylyltransferase -
  CF389_RS07300 - 1569855..1570847 (+) 993 WP_003154589.1 hypothetical protein -
  CF389_RS07305 rok 1570868..1571464 (-) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  CF389_RS07310 - 1571916..1572374 (-) 459 WP_003154593.1 TlpA disulfide reductase family protein -
  CF389_RS07315 - 1572662..1573468 (+) 807 WP_003154595.1 mechanosensitive ion channel family protein -
  CF389_RS07320 - 1573502..1573747 (-) 246 WP_003154596.1 YkuS family protein -
  CF389_RS07325 - 1573808..1574932 (-) 1125 WP_014304923.1 N-acetyldiaminopimelate deacetylase -
  CF389_RS07330 dapD 1575003..1575713 (-) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  CF389_RS07335 - 1575795..1576250 (-) 456 WP_044053160.1 flavodoxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=240716 CF389_RS07305 WP_003154591.1 1570868..1571464(-) (rok) [Bacillus velezensis strain NJAU-Z9]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=240716 CF389_RS07305 WP_003154591.1 1570868..1571464(-) (rok) [Bacillus velezensis strain NJAU-Z9]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCGCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment