Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CEP77_RS05700 Genome accession   NZ_CP028325
Coordinates   1159762..1160229 (-) Length   155 a.a.
NCBI ID   WP_001919603.1    Uniprot ID   -
Organism   Helicobacter pylori strain FDAARGOS_298     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1154762..1165229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEP77_RS05685 (CEP77_05680) - 1155148..1155930 (-) 783 WP_108169605.1 glycosyltransferase family 2 protein -
  CEP77_RS05690 (CEP77_05685) tlpB 1155962..1157659 (-) 1698 WP_108169606.1 methyl-accepting chemotaxis protein TlpB -
  CEP77_RS05695 (CEP77_05690) - 1157865..1159589 (-) 1725 WP_331837384.1 5'-nucleotidase C-terminal domain-containing protein -
  CEP77_RS05700 (CEP77_05695) luxS 1159762..1160229 (-) 468 WP_001919603.1 S-ribosylhomocysteine lyase Regulator
  CEP77_RS05705 (CEP77_05700) - 1160263..1161405 (-) 1143 WP_108169608.1 cystathionine gamma-synthase -
  CEP77_RS05710 (CEP77_05705) - 1161426..1162343 (-) 918 WP_162296842.1 O-acetylserine-dependent cystathionine beta-synthase -
  CEP77_RS05715 (CEP77_05710) - 1162458..1163036 (+) 579 WP_108169610.1 hypothetical protein -
  CEP77_RS05720 (CEP77_05715) dnaK 1163281..1165143 (-) 1863 WP_108169611.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17695.18 Da        Isoelectric Point: 6.8403

>NTDB_id=240715 CEP77_RS05700 WP_001919603.1 1159762..1160229(-) (luxS) [Helicobacter pylori strain FDAARGOS_298]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRFKQPNKDHMDMPSLHSLEHLVAEIIRNHANYVVDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=240715 CEP77_RS05700 WP_001919603.1 1159762..1160229(-) (luxS) [Helicobacter pylori strain FDAARGOS_298]
ATGAAAACGCCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATTGTCAAATACGATGTGCGCTTCAAGCAGCCCAACAAAGATCACATGGACA
TGCCAAGCTTGCACTCTTTAGAGCATTTAGTCGCTGAGATCATCCGCAACCATGCTAATTATGTCGTGGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGCTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGCGCACAGAATTTAGCGCGCGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.844

90.968

0.381

Multiple sequence alignment