Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   CF389_RS04150 Genome accession   NZ_CP022556
Coordinates   812458..813066 (-) Length   202 a.a.
NCBI ID   WP_003153521.1    Uniprot ID   -
Organism   Bacillus velezensis strain NJAU-Z9     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 807458..818066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF389_RS04130 dnaD 807694..808392 (+) 699 WP_003153516.1 DNA replication protein DnaD -
  CF389_RS04135 nth 808411..809070 (+) 660 WP_003153517.1 endonuclease III -
  CF389_RS04140 - 809067..809558 (+) 492 WP_094760532.1 YpoC family protein -
  CF389_RS04145 - 809636..812419 (-) 2784 WP_094760533.1 PBP1A family penicillin-binding protein -
  CF389_RS04150 recU 812458..813066 (-) 609 WP_003153521.1 Holliday junction resolvase RecU Machinery gene
  CF389_RS04155 - 813108..814070 (+) 963 WP_014305287.1 DUF2515 domain-containing protein -
  CF389_RS04160 sspM 814114..814218 (-) 105 WP_003153525.1 acid-soluble spore protein SspM -
  CF389_RS04165 - 814424..814669 (+) 246 WP_014305286.1 DUF5446 family protein -
  CF389_RS04170 - 814715..815083 (+) 369 WP_003153529.1 YppE family protein -
  CF389_RS04175 - 815122..815304 (-) 183 WP_003153532.1 YppF family protein -
  CF389_RS04180 - 815491..815892 (+) 402 WP_048367441.1 YppG family protein -
  CF389_RS04185 - 815922..816335 (-) 414 WP_003153535.1 hypothetical protein -
  CF389_RS04190 - 816474..816980 (+) 507 WP_003153536.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=240709 CF389_RS04150 WP_003153521.1 812458..813066(-) (recU) [Bacillus velezensis strain NJAU-Z9]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=240709 CF389_RS04150 WP_003153521.1 812458..813066(-) (recU) [Bacillus velezensis strain NJAU-Z9]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896

Multiple sequence alignment