Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   CF389_RS03080 Genome accession   NZ_CP022556
Coordinates   566526..567326 (+) Length   266 a.a.
NCBI ID   WP_003153177.1    Uniprot ID   I2C7K5
Organism   Bacillus velezensis strain NJAU-Z9     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 561526..572326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF389_RS03060 - 561648..562493 (+) 846 WP_003153172.1 TlyA family RNA methyltransferase -
  CF389_RS03065 ahrC 562590..563039 (+) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  CF389_RS03070 recN 563071..564801 (+) 1731 WP_003153174.1 DNA repair protein RecN Machinery gene
  CF389_RS03075 spoIVB 564965..566245 (+) 1281 WP_007408360.1 SpoIVB peptidase -
  CF389_RS03080 spo0A 566526..567326 (+) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  CF389_RS03085 alr 567472..568653 (-) 1182 WP_015388018.1 alanine racemase -
  CF389_RS03090 - 568828..569040 (-) 213 WP_014305392.1 spore germination protein -
  CF389_RS03095 - 569166..569378 (-) 213 WP_003153183.1 spore germination protein -
  CF389_RS03100 - 569504..570622 (-) 1119 WP_094760624.1 NADH-dependent flavin oxidoreductase -
  CF389_RS19355 - 570716..570853 (-) 138 WP_162918042.1 hypothetical protein -
  CF389_RS03105 - 571144..571776 (-) 633 WP_003153189.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29630.11 Da        Isoelectric Point: 6.1630

>NTDB_id=240708 CF389_RS03080 WP_003153177.1 566526..567326(+) (spo0A) [Bacillus velezensis strain NJAU-Z9]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=240708 CF389_RS03080 WP_003153177.1 566526..567326(+) (spo0A) [Bacillus velezensis strain NJAU-Z9]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCCGATGTGCTCG
TGTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGTGAATCAGAGCTTGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCATCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCGC
CGTCTGCGCAAAGCAGCATTATCCGCAGCCAGCCGGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAACCAACCAACTCAGAGTTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C7K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.97

Multiple sequence alignment