Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   CF389_RS02575 Genome accession   NZ_CP022556
Coordinates   481289..482056 (+) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus velezensis strain NJAU-Z9     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 476289..487056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF389_RS02545 - 476572..478704 (+) 2133 WP_003152972.1 HD family phosphohydrolase -
  CF389_RS02550 ybeY 478705..479178 (+) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  CF389_RS02555 - 479159..479533 (+) 375 WP_003152974.1 diacylglycerol kinase family protein -
  CF389_RS02560 - 479657..480067 (+) 411 WP_003152976.1 cytidine deaminase -
  CF389_RS02565 era 480048..480953 (+) 906 WP_003152978.1 GTPase Era -
  CF389_RS02570 - 481109..481252 (+) 144 WP_007408286.1 YqzL family protein -
  CF389_RS02575 recO 481289..482056 (+) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  CF389_RS02580 glyQ 482358..483245 (+) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  CF389_RS02585 glyS 483238..485277 (+) 2040 WP_003152986.1 glycine--tRNA ligase subunit beta -
  CF389_RS02590 ccpN 485378..486016 (+) 639 WP_003152989.1 transcriptional regulator CcpN -
  CF389_RS02595 - 486042..486854 (+) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=240699 CF389_RS02575 WP_003152982.1 481289..482056(+) (recO) [Bacillus velezensis strain NJAU-Z9]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=240699 CF389_RS02575 WP_003152982.1 481289..482056(+) (recO) [Bacillus velezensis strain NJAU-Z9]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACATTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894

Multiple sequence alignment