Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   CF389_RS01750 Genome accession   NZ_CP022556
Coordinates   329239..329991 (+) Length   250 a.a.
NCBI ID   WP_003152643.1    Uniprot ID   A0A6A8LH02
Organism   Bacillus velezensis strain NJAU-Z9     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 324239..334991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF389_RS01735 - 324462..324653 (-) 192 WP_003152639.1 hypothetical protein -
  CF389_RS01740 - 325106..327748 (+) 2643 WP_003152640.1 valine--tRNA ligase -
  CF389_RS01745 - 327807..329099 (+) 1293 WP_003152642.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  CF389_RS01750 comC 329239..329991 (+) 753 WP_003152643.1 prepilin peptidase Machinery gene
  CF389_RS01755 - 330118..331119 (+) 1002 WP_003152644.1 SPOR domain-containing protein -
  CF389_RS01760 - 331260..331829 (+) 570 WP_003152645.1 Maf family protein -
  CF389_RS01765 radC 331861..332556 (+) 696 WP_003152646.1 RadC family protein -
  CF389_RS01770 mreB 332648..333661 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  CF389_RS01775 mreC 333692..334555 (+) 864 WP_003152649.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27152.80 Da        Isoelectric Point: 9.2521

>NTDB_id=240692 CF389_RS01750 WP_003152643.1 329239..329991(+) (comC) [Bacillus velezensis strain NJAU-Z9]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSSCSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGSLGKKQPFPFAPAISAGSALSYLYGDELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=240692 CF389_RS01750 WP_003152643.1 329239..329991(+) (comC) [Bacillus velezensis strain NJAU-Z9]
GTGCTTTTAATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCATCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTCCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCGGTATACGGTATGTGCGCCGCAGCCCGGGGCAGTCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGATGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A8LH02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

59.274

99.2

0.588

Multiple sequence alignment