Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   BSG32_RS08975 Genome accession   NZ_CP022552
Coordinates   1820951..1822372 (-) Length   473 a.a.
NCBI ID   WP_021449193.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain MAVP-R     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1815951..1827372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSG32_RS08950 (BSG32_08960) - 1816515..1817165 (+) 651 WP_020840479.1 thiopurine S-methyltransferase -
  BSG32_RS08955 (BSG32_08965) purT 1817267..1818442 (-) 1176 WP_021449196.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  BSG32_RS08960 (BSG32_08970) cdd 1818590..1819477 (-) 888 WP_021449195.1 cytidine deaminase -
  BSG32_RS08965 (BSG32_08975) - 1819842..1820519 (-) 678 WP_005454891.1 LrgB family protein -
  BSG32_RS08970 (BSG32_08980) - 1820521..1820895 (-) 375 WP_031776490.1 CidA/LrgA family protein -
  BSG32_RS08975 (BSG32_08985) sbcB 1820951..1822372 (-) 1422 WP_021449193.1 exodeoxyribonuclease I Machinery gene
  BSG32_RS08980 (BSG32_08990) - 1822528..1823901 (-) 1374 WP_005486634.1 L-cystine transporter -
  BSG32_RS08985 (BSG32_08995) - 1824094..1824789 (-) 696 WP_020903895.1 NAD(P)H-binding protein -
  BSG32_RS08990 (BSG32_09000) cobT 1825473..1826516 (+) 1044 WP_021449191.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  BSG32_RS08995 (BSG32_09005) - 1826561..1827313 (+) 753 WP_031776489.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54645.97 Da        Isoelectric Point: 4.9813

>NTDB_id=240666 BSG32_RS08975 WP_021449193.1 1820951..1822372(-) (sbcB) [Vibrio parahaemolyticus strain MAVP-R]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPSTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=240666 BSG32_RS08975 WP_021449193.1 1820951..1822372(-) (sbcB) [Vibrio parahaemolyticus strain MAVP-R]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTACCTGCTG
ATTATCTACCTTCTCCGGAAGCTGCATTAATTACCGGCATTACGCCGCAAAAGGCGATGCAAGAGGGTCTATCCGAGCCT
GAGTTTATTGCTAAGATTCACGCCGAGTTATCGAAGCCAAAAACCACCAGCCTAGGCTATAACAGCATTCGTTTTGATGA
CGAAGTGACGCGTTACACCTGTTACCGCAACTTTATCGACCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ATTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCAGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCGCAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCATAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGACCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGCATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTAGAGAAAAACTAATCGG
CTTGTTCTCTATCGAGCGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGCTTCTTCTCTCCAGCCG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAAGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.915

100

0.799

Multiple sequence alignment