Detailed information NTG0240655

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C7X15_RS19665
• Genome accession: NZ_CP028320
• Coordinates: 3968676..3969668 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O18:H1 strain CFSAN067215
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3963676..3974668

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C7X15_RS19645 (C7X15_20550)	ygbM	3964314..3965090 (+)	777	WP_001136915.1	HPr family phosphocarrier protein	-
C7X15_RS19650 (C7X15_20555)	ygbN	3965179..3966543 (+)	1365	WP_000104433.1	GntP family transporter	-
C7X15_RS19655 (C7X15_20560)	-	3966686..3967729 (-)	1044	WP_001161573.1	MBL fold metallo-hydrolase	-
C7X15_RS19660 (C7X15_20565)	-	3967954..3968505 (+)	552	WP_001179443.1	flavodoxin family protein	-
C7X15_RS19665 (C7X15_20570)	rpoS	3968676..3969668 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C7X15_RS19670 (C7X15_20575)	nlpD	3969731..3970825 (-)	1095	WP_306163061.1	murein hydrolase activator NlpD	-
C7X15_RS19675 (C7X15_20580)	pcm	3971010..3971636 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
C7X15_RS19680 (C7X15_20585)	surE	3971630..3972391 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C7X15_RS19685 (C7X15_20590)	truD	3972372..3973421 (-)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
C7X15_RS19690 (C7X15_20595)	ispF	3973418..3973897 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C7X15_RS19695 (C7X15_20600)	ispD	3973897..3974607 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=240655 C7X15_RS19665 WP_000081550.1 3968676..3969668(-) (rpoS) [Escherichia coli O18:H1 strain CFSAN067215]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=240655 C7X15_RS19665 WP_000081550.1 3968676..3969668(-) (rpoS) [Escherichia coli O18:H1 strain CFSAN067215]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGTGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715