Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   C7X15_RS16335 Genome accession   NZ_CP028320
Coordinates   3241532..3242959 (+) Length   475 a.a.
NCBI ID   WP_000980604.1    Uniprot ID   -
Organism   Escherichia coli O18:H1 strain CFSAN067215     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3236532..3247959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7X15_RS16295 (C7X15_17060) yeeW 3236717..3236911 (+) 195 WP_000988601.1 DUF5983 family protein -
  C7X15_RS16300 (C7X15_17065) - 3236957..3237037 (+) 81 Protein_3148 hypothetical protein -
  C7X15_RS27265 (C7X15_17070) - 3237326..3237499 (-) 174 WP_032082634.1 transposase domain-containing protein -
  C7X15_RS27270 (C7X15_17075) - 3237526..3237708 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  C7X15_RS16315 (C7X15_17080) tmaR 3237809..3238138 (-) 330 WP_000450409.1 DUF496 family protein -
  C7X15_RS16320 (C7X15_17085) yeeA 3238310..3239368 (-) 1059 WP_001200890.1 FUSC family protein -
  C7X15_RS16325 (C7X15_17090) sbmC 3239566..3240039 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  C7X15_RS16330 (C7X15_17095) dacD 3240158..3241323 (-) 1166 Protein_3154 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  C7X15_RS16335 (C7X15_17100) sbcB 3241532..3242959 (+) 1428 WP_000980604.1 exodeoxyribonuclease I Machinery gene
  C7X15_RS16340 (C7X15_17105) plaP 3243033..3244391 (-) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  C7X15_RS16345 (C7X15_17110) yoeI 3244381..3244443 (-) 63 WP_010723108.1 membrane protein YoeI -
  C7X15_RS16350 (C7X15_17115) yeeY 3244658..3245587 (-) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  C7X15_RS16355 (C7X15_17120) yeeZ 3245633..3246457 (-) 825 WP_000754733.1 SDR family oxidoreductase -
  C7X15_RS16360 (C7X15_17125) yoeB 3246540..3246794 (-) 255 WP_000767822.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  C7X15_RS16365 (C7X15_17130) yefM 3246791..3247042 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  C7X15_RS16370 (C7X15_17135) hisL 3247325..3247375 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54442.73 Da        Isoelectric Point: 5.4720

>NTDB_id=240642 C7X15_RS16335 WP_000980604.1 3241532..3242959(+) (sbcB) [Escherichia coli O18:H1 strain CFSAN067215]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=240642 C7X15_RS16335 WP_000980604.1 3241532..3242959(+) (sbcB) [Escherichia coli O18:H1 strain CFSAN067215]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGAGAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583