Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   C7X15_RS07285 Genome accession   NZ_CP028320
Coordinates   1506117..1506722 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O18:H1 strain CFSAN067215     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1501117..1511722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7X15_RS27095 - 1501671..1501769 (+) 99 Protein_1405 hypothetical protein -
  C7X15_RS07255 (C7X15_07600) rsmS 1501822..1501983 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  C7X15_RS07260 (C7X15_07605) priC 1501997..1502524 (-) 528 WP_000858961.1 primosomal replication protein N'' -
  C7X15_RS07265 (C7X15_07610) ybaN 1502594..1502971 (+) 378 WP_001188900.1 DUF454 family protein -
  C7X15_RS07270 (C7X15_07620) apt 1503124..1503675 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  C7X15_RS07275 (C7X15_07625) dnaX 1503804..1505735 (+) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  C7X15_RS07280 (C7X15_07630) ybaB 1505788..1506117 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  C7X15_RS07285 (C7X15_07635) recR 1506117..1506722 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  C7X15_RS07290 (C7X15_07640) htpG 1506832..1508706 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  C7X15_RS07295 (C7X15_07650) adk 1508887..1509531 (+) 645 WP_001313630.1 adenylate kinase -
  C7X15_RS07300 (C7X15_07655) hemH 1509663..1510625 (+) 963 WP_001250114.1 ferrochelatase -
  C7X15_RS07305 (C7X15_07660) aes 1510622..1511581 (-) 960 WP_000801819.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=240624 C7X15_RS07285 WP_001195025.1 1506117..1506722(+) (recR) [Escherichia coli O18:H1 strain CFSAN067215]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=240624 C7X15_RS07285 WP_001195025.1 1506117..1506722(+) (recR) [Escherichia coli O18:H1 strain CFSAN067215]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443