Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   CG712_RS08240 Genome accession   NZ_CP022547
Coordinates   1553341..1553784 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain B59671     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1548341..1558784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG712_RS08220 (CG712_08285) - 1548863..1549615 (-) 753 WP_096811877.1 NUDIX domain-containing protein -
  CG712_RS08225 (CG712_08290) - 1549679..1550786 (-) 1108 Protein_1539 AAA family ATPase -
  CG712_RS08230 (CG712_08295) gdhA 1551130..1552482 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  CG712_RS08235 (CG712_08300) - 1552740..1553150 (+) 411 WP_011680804.1 peptide deformylase -
  CG712_RS08240 (CG712_08305) rcrR 1553341..1553784 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  CG712_RS08245 (CG712_08310) rcrP 1553788..1555602 (+) 1815 WP_096811878.1 ABC transporter ATP-binding protein Regulator
  CG712_RS08250 (CG712_08315) rcrQ 1555592..1557370 (+) 1779 WP_096811879.1 ABC transporter ATP-binding protein Regulator
  CG712_RS08255 (CG712_08320) - 1557526..1557897 (+) 372 WP_002945426.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=240598 CG712_RS08240 WP_002945408.1 1553341..1553784(+) (rcrR) [Streptococcus thermophilus strain B59671]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=240598 CG712_RS08240 WP_002945408.1 1553341..1553784(+) (rcrR) [Streptococcus thermophilus strain B59671]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment