Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CG712_RS05075 Genome accession   NZ_CP022547
Coordinates   985051..986412 (-) Length   453 a.a.
NCBI ID   WP_096811671.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain B59671     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 980051..991412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG712_RS09945 - 980650..981677 (-) 1028 Protein_984 peptide ABC transporter ATP-binding protein -
  CG712_RS05050 (CG712_05085) rplA 981796..982485 (-) 690 WP_002946412.1 50S ribosomal protein L1 -
  CG712_RS05055 (CG712_05090) rplK 982585..983010 (-) 426 WP_002953535.1 50S ribosomal protein L11 -
  CG712_RS05060 (CG712_05095) - 983182..983535 (+) 354 WP_002953536.1 DUF3397 domain-containing protein -
  CG712_RS05065 (CG712_05100) - 983627..984124 (-) 498 WP_002947059.1 beta-class carbonic anhydrase -
  CG712_RS05070 (CG712_05105) - 984266..984962 (-) 697 Protein_989 TIGR00266 family protein -
  CG712_RS05075 (CG712_05110) radA 985051..986412 (-) 1362 WP_096811671.1 DNA repair protein RadA Machinery gene
  CG712_RS05080 (CG712_05115) - 986590..987036 (-) 447 WP_002947069.1 dUTP diphosphatase -
  CG712_RS05085 (CG712_05120) - 987250..987852 (+) 603 Protein_992 NADPH-dependent FMN reductase -
  CG712_RS10300 - 987871..989104 (+) 1234 Protein_993 NAD(P)H-dependent oxidoreductase -
  CG712_RS05100 (CG712_05135) - 989222..990012 (+) 791 Protein_994 formate/nitrite transporter family protein -
  CG712_RS05105 (CG712_05140) - 990021..990594 (+) 574 Protein_995 MptD family putative ECF transporter S component -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49432.79 Da        Isoelectric Point: 6.6525

>NTDB_id=240570 CG712_RS05075 WP_096811671.1 985051..986412(-) (radA) [Streptococcus thermophilus strain B59671]
MAKKKSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEVQDVRNARVSLTGEKSKPTKLKEVSSISYARIKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVE
GIKPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELIQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFVGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYVPKNSLHGMKIPEGIQVIGVTTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=240570 CG712_RS05075 WP_096811671.1 985051..986412(-) (radA) [Streptococcus thermophilus strain B59671]
ATAGCTAAGAAAAAATCAACTTTTGTTTGTAGAGAATGTGGCTACAATTCACCCAAATATCTAGGGCGCTGTCCCAATTG
TTCTTCTTGGTCCTCTTTTGAGGAAGAGGTTGAGGTGCAGGATGTTAGAAATGCCCGTGTCAGTTTGACGGGTGAAAAGT
CCAAACCTACTAAGTTAAAAGAAGTCTCTTCAATTAGTTATGCCCGCATAAAAACCGATATGGACGAGTTTAACCGTGTT
TTAGGTGGCGGTGTGGTTCCGGGGAGTTTGGTTCTTATTGGAGGAGATCCAGGAATAGGGAAATCGACCCTCCTCTTACA
GGTGTCAACACAGCTGGCTAACAAGGGAACTGTCCTCTATGTTTCTGGGGAAGAATCGGCCGAGCAAATCAAATTGCGGA
GTGAACGTTTAGGTGATATTGATAACGAATTTTATCTGTATGCTGAGACCAATATGCAAGCAGTCCGTAGTCAAGTGGAG
GGTATCAAACCCGATTTCCTCATTATTGATTCTATTCAGACCATCATGAGCCCAGAGATCTCTGGCGTTCAAGGTTCTGT
TTCCCAGGTTCGTGAAGTAACTGCCGAACTCATACAGATTGCCAAAACCAATAACATTGCCACTTTCATTGTTGGGCATG
TGACCAAGGAGGGACAGCTGGCTGGACCACGTATGTTGGAGCACATGGTGGATACTGTGCTTTATTTTGAGGGGGAACGT
CATCATACCTTCCGTATTCTGAGGGCAGTTAAAAACCGTTTTGGTTCAACCAATGAGATTGGGATTTTTGAAATGCAGTC
AGGTGGTCTGGTCGAGGTACTAAACCCTAGCCAAGTTTTCTTAGAAGAACGCCTAGACGGTGCCACAGGTTCTGCCATTG
TTGTCACAATGGAGGGGAGTCGACCTATCCTAGCTGAGGTTCAAGCTTTGGTGACACCGACCGTCTTTGGTAACGCAAAG
CGGACAACGACGGGACTGGACTTTAACCGTGTCAGCCTTATCATGGCTGTCTTAGAGAAACGTTGCGGCCTTCTTCTCCA
AAATCAAGATGCCTATCTCAAATCAGCTGGTGGTGTCAAGTTGGACGAGCCAGCTATTGACCTTGCAGTTGCCGTTGCTA
TCGCTTCTAGTTACAAGGAGCTTCCAACCAATCCACAAGAAGCCTTCGTAGGAGAAATTGGCTTGACCGGAGAGATTCGT
CGTGTGACTCGTATTGAGCAGCGTATCAATGAAGCCGCTAAACTAGGTTTTACTAAGATTTATGTTCCTAAAAATTCGCT
TCATGGCATGAAGATTCCAGAAGGTATCCAGGTCATTGGGGTCACAACGGTAGGAGAAGTACTCAAAAAAGTCTTTTCTT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(61-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.521

100

0.885
  radA Streptococcus pneumoniae D39

88.521

100

0.885
  radA Streptococcus pneumoniae R6

88.521

100

0.885
  radA Streptococcus pneumoniae TIGR4

88.521

100

0.885
  radA Streptococcus mitis NCTC 12261

88.521

100

0.885
  radA Streptococcus mitis SK321

88.521

100

0.885
  radA Bacillus subtilis subsp. subtilis str. 168

61.148

100

0.611

Multiple sequence alignment