Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0J   Type   Regulator
Locus tag   CHF17_RS11120 Genome accession   NZ_CP022537
Coordinates   2153057..2153830 (+) Length   257 a.a.
NCBI ID   WP_000456086.1    Uniprot ID   A0AB38VKI2
Organism   Streptococcus agalactiae strain 874391     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2148057..2158830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHF17_RS11110 (CHF17_02188) rlmH 2151050..2151529 (-) 480 WP_000768335.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  CHF17_RS11115 (CHF17_02189) htrA 2151730..2152959 (+) 1230 WP_000728357.1 trypsin-like peptidase domain-containing protein Regulator
  CHF17_RS11120 (CHF17_02190) spo0J 2153057..2153830 (+) 774 WP_000456086.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 257 a.a.        Molecular weight: 29282.74 Da        Isoelectric Point: 9.8145

>NTDB_id=240526 CHF17_RS11120 WP_000456086.1 2153057..2153830(+) (spo0J) [Streptococcus agalactiae strain 874391]
MEYLETININHIAPNPYQPRLEFNTKELEELADSIKINGLIQPIIVRPSAVFGYELVAGERRLRAAKLAKLESIPAIIKS
YNNDDSMQLAIVENLQRSNLSPIEEAKAYSQLLQKKSMTHEELAKYMGKSRPYISNTIRLLNLPPLITSAIEEGKLSSGH
ARALLSLPDASQQKDWYQRILTEDISVRRLEKLLKQEKKTNHKSLQNKDVFLKHQENELAQFLGSKVKLTINKDGAGNIK
IAFNNQEELNRIINTLK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=240526 CHF17_RS11120 WP_000456086.1 2153057..2153830(+) (spo0J) [Streptococcus agalactiae strain 874391]
ATGGAATATTTAGAAACGATCAACATCAATCATATTGCTCCAAATCCGTATCAACCTCGCCTAGAATTTAATACAAAAGA
ACTAGAAGAATTAGCCGACTCTATTAAAATTAATGGCCTTATTCAACCCATTATTGTAAGACCGTCAGCAGTCTTTGGTT
ACGAACTGGTAGCCGGAGAACGACGGTTAAGAGCCGCAAAGTTAGCTAAATTGGAAAGTATACCTGCAATTATAAAATCC
TATAATAATGATGATAGTATGCAATTAGCTATTGTCGAAAATTTACAACGATCTAATTTGTCACCCATTGAAGAGGCTAA
AGCCTACTCTCAACTTCTACAAAAGAAAAGTATGACACATGAAGAGTTAGCAAAATATATGGGAAAATCTCGTCCCTATA
TATCAAATACGATACGACTACTAAATTTACCGCCACTAATTACTTCAGCTATTGAAGAAGGAAAACTTTCCTCTGGTCAT
GCGCGTGCACTACTCAGTCTACCAGATGCTAGTCAACAAAAAGATTGGTATCAGAGAATCCTCACTGAAGATATTAGTGT
AAGACGACTAGAGAAGTTATTAAAACAAGAAAAGAAAACAAATCATAAGTCACTTCAAAATAAAGATGTCTTTCTAAAAC
ATCAAGAAAATGAGTTAGCTCAATTTCTAGGTAGCAAAGTGAAACTTACTATTAATAAAGATGGTGCTGGCAATATAAAG
ATTGCTTTCAATAACCAAGAAGAATTAAACAGAATTATCAACACTCTAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

57.647

99.222

0.572


Multiple sequence alignment