Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   C7M30_RS08275 Genome accession   NZ_CP028218
Coordinates   1598135..1598569 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain SRCM102756     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1593135..1603569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M30_RS08260 (C7M30_01653) epsK 1593764..1594615 (-) 852 WP_160244251.1 cyclic-di-GMP receptor EpsK -
  C7M30_RS08265 (C7M30_01654) ephJ 1594596..1595684 (-) 1089 WP_160244252.1 lipoprotein YdaJ -
  C7M30_RS08270 (C7M30_01655) topB 1595887..1598070 (-) 2184 WP_160244253.1 DNA topoisomerase III -
  C7M30_RS08275 (C7M30_01656) lrpC 1598135..1598569 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  C7M30_RS08280 (C7M30_01657) ydzA 1598754..1599044 (+) 291 WP_003246602.1 DUF3817 domain-containing protein -
  C7M30_RS08285 (C7M30_01658) amj 1599088..1599897 (-) 810 WP_160244254.1 lipid II flippase Amj -
  C7M30_RS08290 (C7M30_01659) ydaG 1600403..1600825 (-) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  C7M30_RS08295 (C7M30_01660) ydaF 1600903..1601454 (-) 552 WP_160244255.1 GNAT family protein -
  C7M30_RS08300 (C7M30_01661) lyxE 1601541..1602044 (-) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  C7M30_RS08305 (C7M30_01662) ydaD 1602060..1602920 (-) 861 WP_003234401.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=240498 C7M30_RS08275 WP_003246585.1 1598135..1598569(-) (lrpC) [Bacillus subtilis strain SRCM102756]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=240498 C7M30_RS08275 WP_003246585.1 1598135..1598569(-) (lrpC) [Bacillus subtilis strain SRCM102756]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCTGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCATACGCGCAAACCGTTACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment