Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   C7M30_RS01625 Genome accession   NZ_CP028218
Coordinates   297430..297861 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain SRCM102756     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 292430..302861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M30_RS01615 (C7M30_00329) hexA 293914..296490 (-) 2577 WP_160243901.1 DNA mismatch repair protein MutS Machinery gene
  C7M30_RS01620 (C7M30_00330) cotE 296623..297168 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  C7M30_RS01625 (C7M30_00331) ymcA 297430..297861 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  C7M30_RS01630 (C7M30_00332) miaB 297863..299392 (-) 1530 WP_014664026.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  C7M30_RS01635 (C7M30_00333) kbl 299540..300718 (-) 1179 WP_160243902.1 glycine C-acetyltransferase -
  C7M30_RS01640 (C7M30_00334) tdh 300731..301774 (-) 1044 WP_015252072.1 L-threonine 3-dehydrogenase -
  C7M30_RS01645 (C7M30_00335) spoVS 302039..302299 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=240447 C7M30_RS01625 WP_003231834.1 297430..297861(-) (ymcA) [Bacillus subtilis strain SRCM102756]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=240447 C7M30_RS01625 WP_003231834.1 297430..297861(-) (ymcA) [Bacillus subtilis strain SRCM102756]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1