Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   C7M29_RS19970 Genome accession   NZ_CP028217
Coordinates   3880654..3884046 (-) Length   1130 a.a.
NCBI ID   WP_161477090.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102751     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3875654..3889046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M29_RS19925 (C7M29_03926) yisJ 3876707..3877630 (+) 924 WP_161477089.1 CotH kinase family protein -
  C7M29_RS19930 (C7M29_03927) yisI 3877775..3877945 (+) 171 WP_003233086.1 aspartyl-phosphate phosphatase YisI -
  C7M29_RS19935 (C7M29_03928) gerPA 3878368..3878589 (+) 222 WP_003233088.1 spore germination protein -
  C7M29_RS19940 (C7M29_03929) gerPB 3878604..3878837 (+) 234 WP_003233090.1 spore germination protein GerPB -
  C7M29_RS19945 (C7M29_03930) gerPC 3878860..3879477 (+) 618 WP_015252404.1 spore germination protein GerPC -
  C7M29_RS19950 (C7M29_03931) gerPD 3879474..3879650 (+) 177 WP_003233093.1 spore germination protein GerPD -
  C7M29_RS19955 (C7M29_03932) gerPE 3879650..3880051 (+) 402 WP_010886467.1 spore germination protein GerPE -
  C7M29_RS19960 (C7M29_03933) gerPF 3880083..3880301 (+) 219 WP_003233096.1 spore germination protein -
  C7M29_RS19965 (C7M29_03934) hlpB 3880338..3880640 (-) 303 WP_003233097.1 HNH nuclease-like protein HlpB -
  C7M29_RS19970 (C7M29_03935) sbcC 3880654..3884046 (-) 3393 WP_161477090.1 exonuclease subunit SbcC Machinery gene
  C7M29_RS19975 (C7M29_03936) sbcD 3884043..3885218 (-) 1176 WP_128992614.1 exonuclease subunit SbcD -
  C7M29_RS19980 (C7M29_03937) addA 3885290..3888988 (-) 3699 WP_161477091.1 helicase-exonuclease AddAB subunit AddA Machinery gene

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 128925.46 Da        Isoelectric Point: 5.2171

>NTDB_id=240429 C7M29_RS19970 WP_161477090.1 3880654..3884046(-) (sbcC) [Bacillus subtilis strain SRCM102751]
MKPIALSIKGLHSFREEQTIDFEGLSGAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNQAEDTLSVSFTF
ALQTNHQISYKVERVFKRTDEMKVKTALCRFIEIKDEHTVLADKASEVNKRVEELLGLTIDDFTRAVVLPQGKFAEFLSL
KGAERRHMLQRLFNLEQYGDRLVKKLRRQAQEANARKNEMLAEQSGLGEASSEAVEQAEKALEQAEARLEAMRKNRDQAK
ERFTEDQEIWNVQKEKSAYEEEEKRLAEEQPHIDSMQKRLLEAETAAALKPYADRYAEAIQHEEQAEKEQKLAQKDLADR
TAFFQQKHEEYEAWRQHKSEKEPVLLTEQEQLSRLQEIEIKLSEAKQEEARKKTELQQKEEALQSVMNELETVTDRLTRG
QNRQTELKQQLKSLQVTSNERKSCQQAAEMALRIRQTEEQIKKEKKRSEELNVVLQKMNEEKNTLVQKTEAEENNIIRAY
EAVQTVYHLVCETERSLTRMTEEVRKSQHTLHLQREKARVALLTKELAQKLTAGKPCPVCGSTDHDPSASVHETYEADSH
LEEDIKRTDVLLTEAAVFSQEILSAKITLEEQSARFIEQCPFLQTIQAQNLEAAASFEHQPVYEAFETAKFEWKRIKQDI
LSVKTRMAQMIGAYQESLKKAEQLNEKIGFEKREADRIESIITELQTSLDSRLNMFKEAFQDQSVDEAEKWQQAIEEKDR
AAEECEKRIEKSIAFLAEHEAQKEKLRESGHRLEREKLELHYAAERIKSVIADYENELGDYAKGDSIQVKLRSVQQDLKL
LKEKEQSLYEELQSAQMNLNQAKSRASASELTLQEAKGRLEKAKSAWLEHAKNTCFTRTEEVEQSLIPADELEKMKTGID
QFMDKLKQNAANLKRVAEILAGRALSESEWNETVAALQEAEDAFGAAIEEKGAAAKALAVIRDHHKRFNEIEAELKKWQT
HIDRLDKLQAVFKGNTFVEFLAEEQLESVARDASARLSMLTRQRYAIEVDSEGGFVMRDDANGGVRRPVSSLSGGETFLT
SLSLALALSAQIQLRGEYPLQFFFLDEGFGTLDQDLLDTVVTALEKLQSDNLAVGVISHVQELRARLPKKLIVHPAEPSG
RGTRVSLELM

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=240429 C7M29_RS19970 WP_161477090.1 3880654..3884046(-) (sbcC) [Bacillus subtilis strain SRCM102751]
ATGAAGCCGATCGCCTTAAGCATTAAGGGGCTCCACAGCTTTAGAGAGGAGCAGACGATAGATTTTGAAGGCCTTTCCGG
TGCCGGTGTTTTCGGCATTTTCGGTCCGACAGGAAGCGGTAAATCCTCTATTCTTGACGCAATGACGCTTGCTTTATACG
GAAAGGTGGAACGGGCGGCGAATAATACGCACGGTATCTTAAACCAGGCGGAAGATACGCTGTCTGTTTCCTTTACCTTT
GCGCTTCAGACGAATCACCAAATCTCATACAAAGTCGAGCGTGTGTTTAAGAGAACGGATGAAATGAAGGTAAAAACGGC
ACTTTGCCGCTTCATCGAAATCAAGGACGAGCATACGGTGCTGGCTGATAAAGCCAGCGAAGTGAATAAAAGAGTTGAGG
AGCTCTTAGGGCTGACGATCGACGATTTTACGAGAGCGGTGGTGCTGCCCCAAGGGAAATTTGCTGAATTTCTGTCTTTA
AAAGGGGCAGAGCGCAGGCATATGCTTCAGCGTTTATTTAATTTGGAGCAATATGGAGACAGGCTTGTGAAAAAGCTGAG
ACGGCAGGCGCAGGAAGCCAATGCGAGAAAAAATGAAATGCTTGCTGAACAGTCCGGTCTCGGTGAGGCGAGCTCAGAGG
CAGTGGAGCAGGCTGAAAAGGCTCTCGAACAAGCTGAAGCCCGGCTGGAAGCGATGAGGAAGAACCGTGATCAGGCGAAG
GAGCGGTTTACAGAGGATCAGGAGATATGGAATGTCCAAAAGGAAAAATCCGCTTATGAAGAAGAGGAAAAACGTCTCGC
AGAAGAACAGCCGCATATAGACAGCATGCAAAAACGCCTGCTGGAAGCAGAAACAGCAGCAGCTCTTAAGCCCTATGCGG
ACCGGTACGCAGAAGCGATCCAGCATGAGGAACAAGCTGAAAAGGAACAAAAGCTAGCCCAAAAGGATTTAGCAGACCGG
ACAGCTTTCTTTCAGCAAAAACATGAAGAGTATGAAGCGTGGCGCCAGCATAAAAGCGAGAAAGAGCCTGTGCTTTTAAC
AGAGCAGGAACAGCTTTCCCGCTTGCAGGAAATCGAAATCAAACTGAGTGAGGCCAAGCAAGAGGAGGCTCGCAAAAAGA
CTGAACTCCAGCAGAAAGAAGAGGCTCTTCAATCTGTCATGAATGAATTGGAGACGGTAACAGACCGCCTGACACGAGGG
CAAAACAGACAGACAGAATTGAAACAGCAGCTCAAATCCCTGCAGGTGACATCCAATGAGCGAAAAAGCTGCCAGCAGGC
CGCAGAGATGGCATTGCGCATCAGACAAACCGAGGAACAAATCAAAAAAGAGAAAAAACGAAGTGAAGAATTGAACGTCG
TGCTGCAGAAGATGAATGAAGAGAAGAATACACTCGTTCAAAAGACGGAAGCAGAAGAAAACAATATCATTCGGGCATAT
GAGGCAGTTCAAACTGTGTACCATTTGGTGTGCGAAACGGAACGCTCATTAACACGTATGACGGAAGAGGTTAGAAAGAG
TCAACACACGCTTCATTTACAGCGTGAAAAAGCAAGGGTGGCACTGCTGACAAAAGAGTTAGCCCAAAAGCTGACTGCCG
GAAAGCCTTGCCCGGTATGCGGTTCAACCGATCATGATCCATCTGCCTCAGTACATGAAACATATGAAGCCGACAGCCAT
CTTGAAGAGGACATCAAACGGACAGATGTGTTATTGACGGAAGCTGCAGTTTTCAGCCAGGAGATTCTTTCAGCCAAAAT
TACGCTTGAAGAACAGTCCGCTCGCTTTATTGAACAGTGTCCGTTTTTGCAGACAATTCAAGCACAGAACCTTGAAGCGG
CAGCTTCCTTCGAACATCAGCCGGTGTATGAAGCATTTGAAACTGCCAAATTTGAATGGAAACGAATCAAGCAGGACATT
CTTTCTGTTAAGACACGAATGGCACAAATGATTGGCGCCTATCAGGAGTCTTTAAAAAAGGCCGAGCAGCTTAATGAAAA
AATCGGTTTTGAAAAAAGAGAAGCTGACCGTATTGAAAGCATCATCACCGAGCTTCAAACCTCATTGGACAGCCGTCTGA
ACATGTTCAAAGAAGCATTTCAGGATCAATCTGTGGACGAAGCAGAAAAATGGCAGCAAGCCATTGAAGAAAAGGACCGG
GCTGCAGAAGAATGTGAAAAACGAATTGAGAAGAGTATCGCGTTTCTTGCTGAGCATGAAGCACAAAAGGAAAAACTGCG
GGAATCGGGGCATCGGCTTGAACGGGAAAAACTGGAGCTTCATTATGCCGCTGAACGCATCAAGAGCGTGATAGCTGATT
ATGAGAACGAACTTGGAGATTATGCAAAAGGAGATTCTATTCAAGTCAAACTCCGCTCTGTCCAGCAGGATCTAAAGCTG
TTAAAGGAAAAAGAACAATCTTTATATGAAGAACTGCAGAGCGCCCAAATGAACCTCAACCAGGCGAAAAGCCGCGCTTC
GGCAAGCGAGCTCACTCTTCAAGAGGCGAAGGGGAGATTGGAAAAAGCAAAATCTGCTTGGCTTGAGCATGCCAAAAACA
CCTGCTTTACCCGGACTGAGGAGGTTGAACAAAGTCTCATCCCAGCCGATGAACTTGAAAAGATGAAAACCGGCATAGAC
CAGTTTATGGATAAACTGAAGCAAAATGCTGCAAACTTAAAACGAGTAGCAGAGATACTTGCCGGCAGAGCATTATCAGA
GAGCGAATGGAACGAAACCGTTGCAGCATTACAAGAAGCTGAGGACGCATTTGGCGCTGCTATAGAGGAAAAAGGCGCGG
CAGCAAAAGCACTGGCTGTCATTCGCGACCATCATAAACGGTTTAATGAAATTGAAGCTGAACTGAAAAAATGGCAGACG
CATATCGACAGGCTGGACAAGCTGCAAGCTGTGTTTAAAGGCAATACCTTCGTCGAATTTTTAGCTGAGGAGCAGCTTGA
AAGCGTTGCGAGGGACGCCTCAGCAAGACTCAGTATGCTGACAAGACAGCGCTATGCCATCGAAGTAGATTCAGAAGGCG
GCTTCGTGATGCGGGATGACGCGAATGGAGGCGTACGACGCCCGGTTTCCAGTTTGTCTGGAGGAGAGACCTTCCTCACC
TCGCTTTCACTTGCTCTTGCGCTGTCTGCGCAGATTCAGCTTCGGGGGGAATACCCGCTGCAGTTCTTTTTCTTAGATGA
AGGCTTCGGCACACTGGATCAAGATCTGCTTGATACGGTTGTAACGGCCTTGGAAAAACTTCAGTCAGACAATCTGGCTG
TCGGTGTCATCAGCCATGTGCAGGAACTGCGTGCACGGCTTCCGAAAAAGCTGATCGTCCATCCGGCTGAACCGAGCGGC
CGCGGTACGCGGGTATCACTTGAGTTGATGTAA

Domains

Predicted by InterProScan.

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(1002-1085)

AAA domain (AAA_23)

(6-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

97.168

100

0.972

Multiple sequence alignment