Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   C7M29_RS19025 Genome accession   NZ_CP028217
Coordinates   3711780..3712916 (-) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102751     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3706780..3717916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M29_RS18985 (C7M29_03735) xre 3707113..3707454 (+) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -
  C7M29_RS18990 (C7M29_03736) xkdA 3707617..3708213 (+) 597 WP_024572596.1 ImmA/IrrE family metallo-endopeptidase -
  C7M29_RS18995 (C7M29_03737) xpdC 3708257..3709093 (-) 837 WP_131227335.1 manganese catalase family protein -
  C7M29_RS19000 (C7M29_03738) pghB 3709170..3709772 (-) 603 WP_015252289.1 poly-gamma-glutamate hydrolase family protein -
  C7M29_RS19005 (C7M29_03739) yjqA 3709877..3710254 (+) 378 WP_014479546.1 PH domain-containing protein -
  C7M29_RS19010 (C7M29_03740) xlyB 3710294..3711247 (-) 954 WP_161477047.1 N-acetylmuramoyl-L-alanine amidase -
  C7M29_RS19015 (C7M29_03741) yjpA 3711368..3711625 (+) 258 WP_003232731.1 YciI family protein -
  C7M29_RS19020 (C7M29_03742) phrA 3711656..3711790 (-) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  C7M29_RS19025 (C7M29_03743) rapC 3711780..3712916 (-) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  C7M29_RS19030 (C7M29_03744) yjoB 3713061..3714332 (-) 1272 WP_116315580.1 ATPase YjoB -
  C7M29_RS19035 (C7M29_03745) bstD 3714481..3714945 (+) 465 WP_014479541.1 DinB family protein -
  C7M29_RS19040 (C7M29_03746) yjnA 3715170..3715934 (+) 765 WP_161477048.1 sulfite exporter TauE/SafE family protein -
  C7M29_RS19045 (C7M29_03747) uxaA 3715973..3717466 (-) 1494 WP_161477049.1 altronate dehydratase family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=240419 C7M29_RS19025 WP_015252291.1 3711780..3712916(-) (rapC) [Bacillus subtilis strain SRCM102751]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=240419 C7M29_RS19025 WP_015252291.1 3711780..3712916(-) (rapC) [Bacillus subtilis strain SRCM102751]
TTGAGGATGAAGCAGACGATTCCGTCCTCATATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTGGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTACTATAAACGGGCAGAAAAGAATCTTGCTCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTGTATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418