Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   C7M29_RS17630 Genome accession   NZ_CP028217
Coordinates   3453441..3454463 (-) Length   340 a.a.
NCBI ID   WP_015483198.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102751     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3448441..3459463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M29_RS17595 (C7M29_03459) ylbP 3449301..3449783 (+) 483 WP_161477006.1 N-acetyltransferase -
  C7M29_RS17600 (C7M29_03460) gerR 3449840..3450421 (-) 582 WP_003232210.1 sporulation specific transcriptional regulator GerR -
  C7M29_RS17605 (C7M29_03461) rpmF 3450567..3450746 (-) 180 WP_003154457.1 50S ribosomal protein L32 -
  C7M29_RS17610 (C7M29_03462) ylbN 3450768..3451286 (-) 519 WP_110109387.1 DUF177 domain-containing protein -
  C7M29_RS17615 (C7M29_03463) - 3451314..3451499 (+) 186 WP_003232215.1 hypothetical protein -
  C7M29_RS17620 (C7M29_03464) - 3451496..3452728 (+) 1233 WP_015383591.1 nucleotidyltransferase -
  C7M29_RS21090 (C7M29_03465) - 3452801..3453250 (+) 450 WP_015483199.1 hypothetical protein -
  C7M29_RS17630 (C7M29_03466) sepM 3453441..3454463 (-) 1023 WP_015483198.1 protease DdcP Regulator
  C7M29_RS17635 (C7M29_03467) ylbK 3454465..3455247 (-) 783 WP_003232221.1 patatin family protein -
  C7M29_RS17640 (C7M29_03468) spoVV 3455428..3456654 (+) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  C7M29_RS17645 (C7M29_03469) coaD 3456665..3457150 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  C7M29_RS17650 (C7M29_03470) rsmD 3457155..3457709 (-) 555 WP_029317761.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  C7M29_RS17655 (C7M29_03471) ylbG 3458032..3458304 (-) 273 WP_015715839.1 YlbG family protein -
  C7M29_RS17660 (C7M29_03472) ylbF 3458359..3458808 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  C7M29_RS17665 (C7M29_03473) ylbE 3458924..3459163 (-) 240 WP_046381000.1 YlbE-like family protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37551.11 Da        Isoelectric Point: 5.9932

>NTDB_id=240409 C7M29_RS17630 WP_015483198.1 3453441..3454463(-) (sepM) [Bacillus subtilis strain SRCM102751]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSDMKI
VPVDTMQDAIDYLNKLKAKS

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=240409 C7M29_RS17630 WP_015483198.1 3453441..3454463(-) (sepM) [Bacillus subtilis strain SRCM102751]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATTGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAGATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGTTAA

Domains

Predicted by InterProScan.

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.403