Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   C7M29_RS16640 Genome accession   NZ_CP028217
Coordinates   3251746..3252177 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain SRCM102751     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3246746..3257177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M29_RS16630 (C7M29_03267) hexA 3248230..3250806 (-) 2577 WP_029317805.1 DNA mismatch repair protein MutS Machinery gene
  C7M29_RS16635 (C7M29_03268) cotE 3250939..3251484 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  C7M29_RS16640 (C7M29_03269) ymcA 3251746..3252177 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  C7M29_RS16645 (C7M29_03270) miaB 3252179..3253708 (-) 1530 WP_003244831.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  C7M29_RS16650 (C7M29_03271) kbl 3253856..3255034 (-) 1179 WP_106073925.1 glycine C-acetyltransferase -
  C7M29_RS16655 (C7M29_03272) tdh 3255047..3256090 (-) 1044 WP_161476986.1 L-threonine 3-dehydrogenase -
  C7M29_RS16660 (C7M29_03273) spoVS 3256356..3256616 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=240398 C7M29_RS16640 WP_003231834.1 3251746..3252177(-) (ymcA) [Bacillus subtilis strain SRCM102751]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=240398 C7M29_RS16640 WP_003231834.1 3251746..3252177(-) (ymcA) [Bacillus subtilis strain SRCM102751]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCTCGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1