Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   CGZ77_RS08905 Genome accession   NZ_CP022527
Coordinates   1808543..1810777 (-) Length   744 a.a.
NCBI ID   WP_009426868.1    Uniprot ID   -
Organism   Neisseria sp. KEM232     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1803543..1815777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ77_RS08885 (CGZ77_08890) glyQ 1804646..1805557 (-) 912 WP_036496516.1 glycine--tRNA ligase subunit alpha -
  CGZ77_RS08890 (CGZ77_08895) - 1805686..1806342 (+) 657 WP_009426865.1 OmpA family protein -
  CGZ77_RS08895 (CGZ77_08900) pgl 1806628..1807323 (+) 696 WP_009426866.1 6-phosphogluconolactonase -
  CGZ77_RS08900 (CGZ77_08905) - 1807434..1808300 (+) 867 WP_036496477.1 SIS domain-containing protein -
  CGZ77_RS08905 (CGZ77_08910) comA 1808543..1810777 (-) 2235 WP_009426868.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CGZ77_RS08910 (CGZ77_08915) - 1811184..1812527 (-) 1344 WP_009426870.1 FAD-dependent oxidoreductase -
  CGZ77_RS08915 (CGZ77_08920) - 1812803..1814257 (-) 1455 WP_051040457.1 hypothetical protein -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 79753.88 Da        Isoelectric Point: 9.8393

>NTDB_id=240323 CGZ77_RS08905 WP_009426868.1 1808543..1810777(-) (comA) [Neisseria sp. KEM232]
MPFYLLPAFATGVLLSFALPFVPPPAAWAAAFCCAAAALLRWKRAGLLLLLLLVGAAYGVWRTELALAQRWPSEKQGETL
AAAVRVTGLAQDDGRRVRFSAEAVADDGRSYRVQLADYRRRDWPAGSVWRLNLRMRAPVGENNARGFGREAWALANGIDA
LATAGADRQALGFADGLSDGLLRLRAAVSASWRRMPQETADGAALMRALAVGEQDALRGEWWQAFRPLGLNHLVSVSGLH
VSMVALLAAWLAKRLLLVLPVAPRRPKVWLLAAGVAAALFYTALAGFAVPTLRSLLMVAAVAAAWAAGGAASAWRGWWFA
LALVLLLDPSAALAVGSWLSFGLVASLLWADSWRTGRRSWPLAALRGQWAATLASSVATGWLFAALPLASPLANAPMIPW
FSWVLVPLALAASLLPFYPLQYAASWLGEQTLQTLAWLADYAPEWGVAAAPWPLSALAAAAACVWLLPRGAGLRPWAALV
LAGFVFYRPAPPEQGRLKTVVIDVGQGLSVYFQTASHVLLFDTGTEGAAQMQTLPVLRALGVRRPDVLLLSHHDADHDGG
APLLTAALRPRAVLAGQPEFYPQAQSCREETAWEWDGVRFELLDTGAGGAGDNGQSCVLRVLAGETAVLVTGDLDTRGEA
ELVRRYGDALRSQVLVLGHHGSKGSSSGAFVNAVSPDYAVASAGFGNPYGHPAREVQTRLSAHGAHLLRTDRQGAWLFDS
GGQTLSARQWQPKRFYWQQKPFAD

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=240323 CGZ77_RS08905 WP_009426868.1 1808543..1810777(-) (comA) [Neisseria sp. KEM232]
GTGCCCTTTTACCTACTGCCCGCTTTCGCCACCGGCGTACTGCTGTCGTTCGCCCTGCCCTTTGTGCCGCCGCCCGCTGC
GTGGGCGGCGGCTTTCTGCTGCGCGGCGGCGGCTCTGCTGCGGTGGAAACGCGCGGGTTTGCTGCTTTTGCTGCTGCTTG
TCGGCGCGGCTTACGGCGTGTGGCGCACGGAGCTGGCGTTGGCGCAGCGGTGGCCGTCTGAAAAACAGGGCGAGACGCTG
GCGGCGGCGGTGCGCGTGACGGGGCTGGCGCAGGACGACGGGCGGCGGGTGCGCTTTAGCGCCGAAGCGGTGGCGGACGA
CGGACGAAGCTACCGCGTGCAGCTGGCCGACTACCGCCGCCGCGACTGGCCTGCAGGCAGCGTGTGGCGGCTGAACCTGC
GGATGCGCGCCCCCGTCGGCGAGAACAACGCGCGCGGTTTCGGCCGCGAGGCATGGGCGCTGGCCAACGGCATCGACGCG
CTGGCGACGGCGGGTGCCGATCGGCAGGCGCTGGGGTTTGCAGACGGCCTTTCAGACGGCCTCCTGCGCCTGCGCGCAGC
CGTCAGCGCAAGCTGGCGGCGGATGCCGCAGGAAACGGCCGACGGCGCGGCACTGATGCGGGCGTTGGCCGTCGGCGAAC
AGGACGCGTTGCGCGGCGAATGGTGGCAGGCTTTCCGCCCGCTGGGGCTGAACCATCTGGTAAGCGTGTCGGGGCTGCAC
GTGTCGATGGTGGCGCTGCTGGCGGCATGGCTGGCAAAAAGGCTGCTGCTCGTACTGCCCGTTGCGCCGCGCCGGCCGAA
GGTTTGGCTGCTGGCGGCGGGCGTGGCGGCGGCCTTGTTTTACACGGCGCTGGCGGGTTTTGCCGTGCCGACGCTGCGCT
CGCTGCTGATGGTGGCGGCGGTGGCGGCCGCGTGGGCGGCGGGCGGCGCGGCTTCGGCCTGGCGCGGCTGGTGGTTTGCG
CTGGCTTTGGTTTTGCTGCTCGACCCCTCGGCGGCACTCGCGGTGGGAAGCTGGCTGTCCTTCGGTTTGGTGGCGTCTCT
GCTGTGGGCGGACTCGTGGCGCACGGGCAGGCGTTCTTGGCCGCTTGCCGCCCTGCGCGGGCAGTGGGCGGCGACGCTGG
CCTCGTCGGTGGCAACGGGCTGGCTGTTTGCCGCCCTGCCCCTTGCCTCGCCGCTGGCAAACGCGCCGATGATTCCGTGG
TTTTCCTGGGTGCTGGTGCCGCTGGCGTTGGCGGCGTCGCTGCTGCCGTTTTACCCGCTGCAATACGCGGCATCATGGCT
GGGCGAACAGACTTTGCAGACGCTGGCTTGGCTGGCGGATTACGCGCCCGAATGGGGCGTGGCCGCCGCGCCGTGGCCGC
TGTCCGCGCTGGCGGCTGCGGCGGCCTGCGTGTGGCTGCTGCCGCGCGGCGCGGGCTTGCGGCCGTGGGCGGCGCTGGTG
CTGGCGGGCTTTGTCTTCTACCGCCCCGCGCCGCCCGAACAAGGCCGTCTGAAAACCGTCGTGATCGATGTCGGACAGGG
TTTGTCGGTGTATTTTCAGACGGCCTCGCACGTCCTCCTGTTCGATACGGGCACGGAGGGTGCGGCGCAGATGCAGACCC
TGCCCGTCCTGCGCGCGCTCGGCGTGCGGCGGCCGGACGTGCTGCTTTTGTCGCACCACGATGCCGACCACGACGGCGGC
GCGCCGCTGCTCACAGCCGCCCTGCGCCCGCGCGCCGTGCTGGCCGGACAGCCGGAGTTTTACCCGCAGGCGCAAAGCTG
CCGCGAGGAAACGGCATGGGAATGGGACGGCGTGCGCTTCGAGCTTTTGGACACGGGCGCGGGCGGCGCGGGCGACAACG
GTCAAAGCTGCGTGCTGCGCGTGCTGGCGGGGGAAACGGCGGTGCTGGTAACGGGCGACTTGGACACGCGCGGTGAGGCC
GAACTGGTACGCCGCTACGGCGACGCCCTGCGCTCGCAGGTGTTGGTGTTGGGACACCACGGCAGCAAAGGCTCGTCGTC
GGGCGCGTTTGTCAACGCCGTATCGCCCGATTACGCCGTCGCCTCGGCAGGCTTCGGCAATCCCTACGGCCACCCCGCCC
GCGAAGTGCAAACCCGCCTGTCCGCCCACGGCGCACACCTGCTGCGCACCGACCGACAAGGCGCATGGCTGTTCGACAGC
GGCGGCCAAACCCTGAGCGCACGCCAATGGCAGCCCAAACGCTTTTACTGGCAGCAGAAACCGTTTGCCGACTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(209-467)

Metallo-beta-lactamase superfamily (Lactamase_B)

(503-683)

Domain of unknown function (DUF4131) (DUF4131)

(24-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Neisseria gonorrhoeae MS11

55.242

100

0.552

Multiple sequence alignment