Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   CGZ77_RS07555 Genome accession   NZ_CP022527
Coordinates   1523723..1527289 (-) Length   1188 a.a.
NCBI ID   WP_036496379.1    Uniprot ID   -
Organism   Neisseria sp. KEM232     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1518723..1532289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ77_RS07530 (CGZ77_07535) - 1518903..1519697 (+) 795 WP_009426689.1 hypothetical protein -
  CGZ77_RS07535 (CGZ77_07540) - 1519844..1520374 (+) 531 WP_009426690.1 hypothetical protein -
  CGZ77_RS07540 (CGZ77_07545) - 1520615..1521937 (-) 1323 WP_036496377.1 paraquat-inducible protein A -
  CGZ77_RS07545 (CGZ77_07550) - 1522077..1522463 (-) 387 WP_009426693.1 MAPEG family protein -
  CGZ77_RS07550 (CGZ77_07555) - 1522681..1523640 (+) 960 WP_009426695.1 phosphatidate cytidylyltransferase -
  CGZ77_RS07555 (CGZ77_07560) recB 1523723..1527289 (-) 3567 WP_036496379.1 exodeoxyribonuclease V subunit beta Machinery gene
  CGZ77_RS07560 (CGZ77_07565) serS 1527728..1529020 (-) 1293 WP_009426157.1 serine--tRNA ligase -
  CGZ77_RS07565 (CGZ77_07570) - 1529238..1529819 (+) 582 WP_036496129.1 superoxide dismutase -
  CGZ77_RS07570 (CGZ77_07575) - 1530068..1530766 (-) 699 WP_009426153.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -
  CGZ77_RS07575 (CGZ77_07580) queF 1530777..1531250 (-) 474 WP_009426152.1 preQ(1) synthase -
  CGZ77_RS12085 - 1531619..1531774 (+) 156 WP_157058129.1 hypothetical protein -

Sequence

Protein


Download         Length: 1188 a.a.        Molecular weight: 131734.01 Da        Isoelectric Point: 6.2820

>NTDB_id=240318 CGZ77_RS07555 WP_036496379.1 1523723..1527289(-) (recB) [Neisseria sp. KEM232]
MNPTALPFSPLDIPISGTSLIEASAGTGKTYGIAALFARLILLEKMPVDKVLVVTFTKAATAELKTRLRARLDEALRRLQ
GTDLPEAADEFMSGLLQRALEQEPRERLQLRLKAALSQFDSAAIYTIHGFCRRLLGDYAFLCQVPFDTELDENGKRELYT
YAQDFWRLRVAGNGRLARLVFRAKLLPDALLDELSPYLARPALTFRRPDDNILPEAEKQAQSAWRTLRGKLPELTATFWR
VHPSLSGSKFKKALYETKFAELAALAESEEMPSEKLAQLLANTKGISVFAPEYLEAAVKKGQNPAAADLADLTLLHGAHQ
AAENLLAAEHQALIALQLDFLQYVRESAAEKRRTRTGRSPDELLLDVYHALTAGTHAETLADTVAHNWPVALIDEFQDTD
PLQYEIFRRIFIKRQRPLFLVGDPKQAIYAFRGADIYAYLQAAADTPQHYTLARNFRSHSRLTEATARLFTQKNRPFVLE
RIGYPEVEAARADSRLSPPQAALNIRWLHEKGEDAPDKALLRQRAADYCAAEAAALINAGAQGRLKYRGAPVQPGHIAVL
VHSHNQGQLVKRALSARGIASVSVQRESVFKSAEAQALAALLAFWLEPQRTGLLRFVLGSVLFGHTAAQIAELNSSEARL
SEHTAAAAADRETWQRQGIFAALAAFAAQHGIETRLLREGNERSLTNFWQLAELLAAEDEAGHTPASLHQWLLQTMQDDS
AAEHHLLRLESDEALVKIVTIHASKGLQYPFVFCPFSWDTSEAAAGNWHILHRADGSELLELSQLDEADQNQLADEDLGE
RLRLLYVALTRAEEQLTVYAARCRSTPRNTFAYLLEGSPDSSRAAVQTAYEEEKDGQSAMLRRNWLRWIESAPADSGILW
HEGAPVSAAADSRGRGTHTYRAAEYPSRRFELVRFTSFTGLTRRLSHHRAAGDELQPALDQAESAAAPPAAPASDESGML
DLFHFPRGTEAGVCLHEILEQHDFSRPAAEQSTRIADTLERYGFPEQWLETACAAADHAAAADLGAGDTLAILPAANRLA
EMGFVMHFDRFDLGRLKTSLAAAGLPSACLAAAEHLDFDTLQGFLNGFIDMTCLLSDGQPCVIDYKSNHLGNHPDDYAPA
ALDAAVAEHHYYLQAWIYALAVARYLKQRGRPVQTVRVRYLFLRGLNTENRNGIWQWDIAAEHLAPWL

Nucleotide


Download         Length: 3567 bp        

>NTDB_id=240318 CGZ77_RS07555 WP_036496379.1 1523723..1527289(-) (recB) [Neisseria sp. KEM232]
ATGAACCCAACCGCCCTTCCCTTCTCCCCCCTCGACATTCCGATTTCCGGCACCTCCCTGATCGAAGCCTCGGCCGGTAC
AGGCAAAACCTACGGCATCGCCGCCCTGTTTGCCCGCCTGATCCTGCTGGAAAAAATGCCGGTAGACAAAGTGCTGGTGG
TAACTTTCACCAAAGCCGCCACCGCCGAATTGAAAACCCGCCTGCGTGCGCGGCTGGACGAAGCCCTGCGCCGTTTGCAG
GGAACGGATTTGCCCGAAGCGGCCGACGAATTCATGAGCGGCCTGCTGCAACGCGCGCTGGAACAAGAGCCGCGCGAGCG
CCTGCAACTGCGCCTGAAAGCCGCCCTGTCGCAGTTCGACAGCGCCGCCATCTACACCATCCACGGCTTCTGCCGCCGCC
TGCTCGGCGACTACGCCTTCCTCTGCCAAGTCCCCTTCGACACCGAACTCGACGAAAACGGCAAACGCGAACTGTACACC
TACGCACAGGACTTTTGGCGGCTGCGCGTCGCCGGTAATGGGCGCCTCGCCCGCCTCGTCTTCCGCGCCAAACTCCTGCC
CGACGCGCTGTTGGACGAACTCTCGCCCTACCTCGCCCGCCCCGCCCTCACGTTCAGACGGCCTGACGACAACATCCTGC
CCGAAGCAGAAAAACAGGCGCAATCGGCATGGCGCACACTACGCGGAAAACTCCCCGAGCTCACCGCCACCTTCTGGCGC
GTGCATCCGTCATTAAGCGGCAGCAAATTCAAAAAAGCGCTTTACGAAACCAAATTCGCCGAACTGGCCGCGCTGGCCGA
AAGCGAAGAGATGCCGTCTGAAAAACTGGCGCAGCTGCTGGCTAATACCAAAGGCATCAGCGTTTTCGCCCCCGAATACC
TCGAAGCCGCCGTCAAAAAAGGGCAAAACCCCGCCGCCGCCGACCTTGCCGACCTCACCCTGCTGCACGGCGCCCACCAA
GCCGCAGAAAACCTGCTGGCCGCCGAACATCAGGCGCTGATCGCCCTGCAACTGGACTTTCTGCAATACGTGCGCGAAAG
CGCCGCCGAAAAACGCCGCACGCGCACCGGCCGCAGCCCCGACGAGCTGCTGCTCGACGTCTACCACGCCCTCACCGCAG
GCACGCACGCCGAAACGCTGGCCGACACCGTGGCGCACAACTGGCCGGTCGCCCTCATCGACGAATTCCAAGACACCGAC
CCGCTGCAATACGAAATCTTCCGCCGCATCTTTATCAAACGGCAGCGGCCGCTGTTTCTCGTCGGCGACCCCAAGCAGGC
GATTTACGCCTTTCGCGGCGCCGACATCTACGCCTATCTGCAGGCCGCCGCCGACACGCCGCAGCACTACACGCTGGCGC
GCAACTTCCGCAGCCACAGCCGCCTGACCGAGGCGACGGCACGCCTGTTCACACAAAAAAACCGTCCCTTCGTGCTCGAG
CGCATCGGCTATCCCGAAGTCGAAGCCGCCCGCGCCGACAGCCGCCTCAGCCCGCCACAGGCCGCCCTCAACATCCGCTG
GCTGCACGAGAAAGGCGAAGACGCGCCCGACAAAGCCCTCCTGCGCCAACGCGCCGCCGACTACTGCGCCGCCGAAGCCG
CCGCCCTCATCAACGCGGGCGCACAAGGCCGTCTGAAATACCGCGGCGCACCCGTGCAGCCCGGCCATATCGCCGTCCTC
GTCCACAGCCACAACCAGGGGCAGCTCGTCAAACGCGCCCTGTCCGCACGCGGCATCGCCTCCGTTTCCGTGCAGCGCGA
ATCCGTTTTCAAAAGCGCCGAAGCCCAAGCCCTCGCCGCCCTGTTGGCCTTCTGGCTCGAACCGCAGCGCACCGGCCTGC
TGCGCTTCGTGCTCGGCAGCGTGCTGTTCGGCCACACCGCCGCGCAAATCGCCGAGCTGAACAGCAGCGAAGCGCGTCTG
TCCGAACACACCGCAGCCGCCGCAGCCGACCGCGAAACCTGGCAGCGGCAGGGCATTTTTGCCGCCCTGGCCGCCTTTGC
CGCGCAACACGGCATCGAAACGCGCCTGCTGCGGGAGGGCAACGAACGCAGCCTCACCAACTTCTGGCAGCTGGCCGAAC
TGCTCGCCGCCGAAGACGAAGCCGGACACACCCCTGCCTCGCTCCACCAATGGCTCTTGCAGACGATGCAGGACGACAGT
GCCGCCGAACACCACCTGCTGCGCCTGGAAAGCGACGAAGCCCTCGTCAAAATCGTCACCATCCACGCCTCAAAGGGTTT
GCAATATCCTTTCGTTTTCTGCCCCTTCTCGTGGGACACGAGCGAAGCCGCCGCCGGCAACTGGCACATCCTCCACCGCG
CAGACGGCAGCGAACTTCTCGAACTGAGCCAGCTCGACGAAGCCGACCAAAACCAACTGGCCGACGAAGATTTGGGCGAG
CGCCTGCGCCTGCTCTACGTCGCCCTCACCCGCGCCGAAGAGCAGCTCACCGTCTACGCCGCCCGCTGCCGCAGCACGCC
GCGCAACACCTTTGCCTACCTGCTCGAAGGTTCGCCCGACAGCAGCCGCGCCGCCGTTCAGACGGCCTACGAAGAAGAAA
AAGACGGCCAAAGCGCCATGCTGCGCCGCAACTGGCTGCGCTGGATAGAAAGCGCCCCCGCCGACAGCGGCATCCTCTGG
CACGAAGGCGCGCCCGTCAGCGCCGCCGCCGACAGCCGCGGCCGCGGCACGCACACCTACCGCGCCGCCGAATACCCGTC
GCGCCGCTTCGAACTCGTCCGTTTTACCAGCTTCACCGGCCTCACCCGCCGCCTGTCCCATCACCGCGCCGCAGGCGACG
AACTCCAACCCGCCCTCGATCAGGCCGAATCGGCCGCCGCGCCGCCCGCCGCCCCCGCGTCGGACGAAAGCGGAATGCTC
GACCTTTTCCACTTCCCTCGCGGCACGGAAGCGGGCGTCTGCCTGCACGAAATCCTCGAACAGCACGACTTTTCCCGCCC
CGCCGCCGAACAAAGCACCCGCATTGCCGACACCCTCGAGCGCTACGGCTTCCCCGAGCAATGGCTGGAAACCGCCTGCG
CCGCCGCCGACCACGCCGCCGCCGCCGATCTTGGTGCGGGCGACACCCTCGCCATCCTGCCCGCCGCAAACCGCCTCGCC
GAAATGGGCTTCGTCATGCACTTCGACCGCTTCGACTTAGGCCGTCTGAAAACAAGCCTCGCCGCCGCCGGCCTGCCCTC
CGCCTGCCTTGCCGCCGCAGAACATCTCGACTTCGACACCCTGCAAGGCTTTCTCAACGGCTTTATCGACATGACCTGCC
TGCTTTCAGACGGCCAACCCTGCGTGATCGACTACAAATCCAACCACCTCGGCAACCACCCCGACGACTACGCCCCCGCC
GCCCTCGATGCCGCCGTGGCCGAACACCACTACTACCTGCAAGCCTGGATTTACGCGCTGGCCGTCGCCCGCTACCTCAA
ACAGCGCGGCCGTCCCGTGCAAACCGTCCGCGTCCGCTATCTTTTCCTGCGCGGCCTGAACACGGAAAACCGCAACGGCA
TCTGGCAGTGGGACATTGCTGCGGAACACCTCGCCCCCTGGCTGTAA

Domains

Predicted by InterproScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(16-445)

UvrD-like helicase C-terminal domain (UvrD_C)

(450-820)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

50.828

100

0.517

Multiple sequence alignment