Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   CGZ77_RS06335 Genome accession   NZ_CP022527
Coordinates   1275754..1277469 (+) Length   571 a.a.
NCBI ID   WP_009425701.1    Uniprot ID   L1NTZ1
Organism   Neisseria sp. KEM232     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1270754..1282469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ77_RS06320 (CGZ77_06325) crcB 1270861..1271253 (-) 393 WP_009425705.1 fluoride efflux transporter CrcB -
  CGZ77_RS06325 (CGZ77_06330) - 1271250..1271942 (-) 693 WP_036495804.1 energy-coupling factor ABC transporter permease -
  CGZ77_RS06330 (CGZ77_06335) - 1272068..1275433 (+) 3366 WP_094031034.1 DNA translocase FtsK -
  CGZ77_RS06335 (CGZ77_06340) recD 1275754..1277469 (+) 1716 WP_009425701.1 exodeoxyribonuclease V subunit alpha Machinery gene
  CGZ77_RS06340 (CGZ77_06345) - 1277599..1277997 (+) 399 WP_009425700.1 immunity 22 family protein -
  CGZ77_RS06345 (CGZ77_06350) - 1278025..1278468 (+) 444 WP_009425699.1 DNA polymerase III subunit chi -
  CGZ77_RS06350 (CGZ77_06355) - 1278473..1278730 (+) 258 WP_009425698.1 DUF1289 domain-containing protein -
  CGZ77_RS12785 - 1278829..1279194 (+) 366 WP_036495789.1 hypothetical protein -
  CGZ77_RS06365 (CGZ77_06370) - 1279540..1280601 (+) 1062 WP_036495786.1 FAD:protein FMN transferase -
  CGZ77_RS06370 (CGZ77_06375) nqrM 1280598..1280816 (+) 219 WP_009425695.1 (Na+)-NQR maturation NqrM -
  CGZ77_RS06375 (CGZ77_06380) dusA 1280898..1281932 (+) 1035 WP_094031214.1 tRNA dihydrouridine(20/20a) synthase DusA -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 60390.68 Da        Isoelectric Point: 6.0820

>NTDB_id=240315 CGZ77_RS06335 WP_009425701.1 1275754..1277469(+) (recD) [Neisseria sp. KEM232]
MSDNEFRNAAADAALDVLQRLFPEAAAVCAPFLPRLFSALDDGHSFIWLNDAEAEALDSAAPLADGTGRGPLVLRGRRLF
LGRLWQLENDLAGEIRRLAAAPAAPADMRAAAENLGLWFDGAGSEGQQAAAALALLQNFMLITGGPGTGKTTTVAKLLAL
LCSGADSLPRIALAAPTGKAAAHMGNALHAALGRFPLSDGLKERLSALEGQTVHRLLKLRPPQMRPQFDAARPLPLDILV
VDEASMLDLALMLDLLRAVPDGCRVILLGDENQLPSVGAGAVLAALARPTVLDADTAGRLKTLLPDAAERFQTASNAPPL
SANTARLTVSHRFGEHSGLGALARAVCAGDAAGAEDAFARFPEELSFADGGAERLAERFCRTQAAFWQAADAADPAAAFA
CQSRLTVLAARRGDAERFNEACRRILLREGRAREDRAWFAGQILMVERNDYAMGLFNGDIGIVMPDPHGSDGLSVRFPAG
GGFRSVPLSRLPAHSSAFAVTVHKSQGSEYGEVWLLAPEGGGEGFNRSLLYTAVTRARERFVYAGSRESFAAACANAETR
RTALREFLAAG

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=240315 CGZ77_RS06335 WP_009425701.1 1275754..1277469(+) (recD) [Neisseria sp. KEM232]
ATGTCCGACAACGAATTCCGCAACGCCGCCGCCGATGCTGCGCTCGACGTGCTGCAACGCCTGTTTCCCGAAGCCGCCGC
CGTGTGCGCGCCTTTTCTGCCGCGCCTGTTTTCCGCCCTCGACGACGGTCACAGTTTTATTTGGCTGAACGACGCGGAGG
CCGAAGCGCTTGATAGCGCCGCGCCGCTGGCCGACGGCACGGGCAGGGGGCCGCTGGTGTTGCGCGGGCGGCGGCTGTTT
CTCGGACGCCTGTGGCAGCTGGAAAACGATTTGGCGGGCGAAATCCGCCGCCTCGCCGCCGCGCCCGCCGCGCCTGCCGA
TATGCGGGCGGCGGCGGAAAACCTCGGCCTGTGGTTTGACGGTGCGGGCAGCGAAGGGCAGCAGGCCGCCGCCGCGCTGG
CGCTGCTGCAAAACTTTATGCTGATTACCGGCGGGCCGGGCACGGGCAAAACCACCACCGTCGCCAAGCTGCTCGCCCTT
TTGTGTTCGGGCGCCGACTCTCTGCCGCGCATCGCGCTGGCCGCGCCGACGGGCAAGGCGGCGGCGCATATGGGCAACGC
GCTGCACGCGGCGCTCGGCCGTTTCCCGCTTTCAGACGGCCTCAAAGAGCGGTTGTCTGCCCTCGAAGGGCAAACCGTCC
ACCGCCTGCTGAAACTGCGTCCGCCGCAGATGCGGCCGCAGTTTGACGCCGCCCGCCCGCTGCCGCTGGATATTTTGGTG
GTGGACGAAGCCTCGATGCTCGATCTGGCGCTGATGCTCGATCTGCTGCGCGCCGTGCCCGACGGTTGCCGCGTGATTCT
GTTGGGCGACGAAAACCAGCTTCCTTCCGTCGGCGCGGGTGCGGTGCTGGCGGCGCTGGCGCGGCCGACCGTGCTCGATG
CCGACACCGCAGGCCGTCTGAAAACCCTGCTGCCCGATGCCGCAGAGCGTTTTCAGACGGCCTCAAACGCGCCGCCCCTG
TCGGCCAATACCGCCCGCCTCACCGTCAGCCACCGCTTCGGCGAACACAGCGGTTTGGGCGCGCTGGCGCGGGCGGTGTG
CGCGGGCGATGCGGCGGGAGCGGAAGACGCCTTCGCCCGTTTCCCCGAAGAATTGTCGTTTGCCGATGGCGGCGCCGAAC
GTTTGGCGGAGCGTTTCTGCCGCACGCAGGCGGCGTTTTGGCAGGCGGCCGATGCCGCCGATCCTGCCGCCGCTTTTGCC
TGCCAGAGCCGCCTCACCGTGCTGGCCGCGCGGCGCGGCGACGCCGAACGTTTTAACGAAGCCTGCCGCCGCATTCTGCT
GCGCGAAGGGCGCGCGCGCGAAGACAGGGCGTGGTTTGCCGGACAAATCCTGATGGTGGAGCGCAACGATTACGCGATGG
GGCTGTTTAACGGCGACATCGGCATTGTGATGCCCGACCCGCACGGCTCGGACGGCCTGTCGGTGCGGTTTCCCGCAGGC
GGCGGTTTCCGCAGCGTGCCGCTCAGCCGCCTGCCCGCGCACAGCAGCGCGTTTGCCGTGACCGTGCACAAAAGCCAGGG
CTCGGAATACGGCGAAGTGTGGCTGCTCGCGCCCGAAGGCGGCGGAGAGGGTTTCAACCGTTCCCTGCTGTACACCGCCG
TCACCCGCGCGCGCGAACGCTTTGTATACGCAGGCAGCCGCGAATCCTTCGCCGCCGCCTGCGCCAACGCCGAAACCCGC
CGCACCGCCCTGCGCGAATTTTTGGCGGCAGGGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(124-289)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(497-540)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB L1NTZ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

53.993

100

0.545

Multiple sequence alignment