Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   C7M29_RS02455 Genome accession   NZ_CP028217
Coordinates   469564..469998 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain SRCM102751     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 464564..474998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M29_RS02440 (C7M29_00485) epsK 465193..466044 (-) 852 WP_086343469.1 cyclic-di-GMP receptor EpsK -
  C7M29_RS02445 (C7M29_00486) ephJ 466025..467113 (-) 1089 WP_161476456.1 lipoprotein YdaJ -
  C7M29_RS02450 (C7M29_00487) topB 467316..469499 (-) 2184 WP_161476457.1 DNA topoisomerase III -
  C7M29_RS02455 (C7M29_00488) lrpC 469564..469998 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  C7M29_RS02460 (C7M29_00489) ydzA 470183..470473 (+) 291 WP_014475846.1 DUF3817 domain-containing protein -
  C7M29_RS02465 (C7M29_00490) amj 470518..471327 (-) 810 WP_015715258.1 lipid II flippase Amj -
  C7M29_RS02470 (C7M29_00491) ydaG 471833..472255 (-) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  C7M29_RS02475 (C7M29_00492) ydaF 472333..472884 (-) 552 WP_015252797.1 GNAT family protein -
  C7M29_RS02480 (C7M29_00493) lyxE 472972..473475 (-) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  C7M29_RS02485 (C7M29_00494) ydaD 473491..474351 (-) 861 WP_003234401.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=240299 C7M29_RS02455 WP_003246585.1 469564..469998(-) (lrpC) [Bacillus subtilis strain SRCM102751]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=240299 C7M29_RS02455 WP_003246585.1 469564..469998(-) (lrpC) [Bacillus subtilis strain SRCM102751]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTAGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1