Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   C7M29_RS01170 Genome accession   NZ_CP028217
Coordinates   217847..218977 (-) Length   376 a.a.
NCBI ID   WP_019712801.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102751     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 212847..223977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M29_RS01125 (C7M29_00222) cotJC 212999..213568 (-) 570 WP_003233850.1 spore coat protein CotJC -
  C7M29_RS01130 (C7M29_00223) cotJB 213583..213846 (-) 264 WP_003219491.1 spore coat protein CotJB -
  C7M29_RS01135 (C7M29_00224) cotJA 213830..214078 (-) 249 WP_003219489.1 spore coat-associated protein CotJA -
  C7M29_RS01140 (C7M29_00225) yesF 214205..215073 (-) 869 Protein_208 NAD-dependent epimerase/dehydratase family protein -
  C7M29_RS01145 (C7M29_00226) yesE 215070..215513 (-) 444 WP_019712804.1 nuclear transport factor 2 family protein -
  C7M29_RS01150 (C7M29_00227) yezE 215592..216176 (-) 585 WP_161476395.1 TetR/AcrR family transcriptional regulator -
  C7M29_RS01155 (C7M29_00228) - 216291..216671 (-) 381 WP_161476396.1 spore coat protein -
  C7M29_RS01160 (C7M29_00229) yeeI 216805..217524 (-) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  C7M29_RS01165 (C7M29_00230) phrH 217684..217857 (-) 174 WP_015715465.1 phosphatase RapH inhibitor PhrH -
  C7M29_RS01170 (C7M29_00231) rapC 217847..218977 (-) 1131 WP_019712801.1 response regulator aspartate phosphatase RapH Regulator
  C7M29_RS01175 (C7M29_00232) - 219123..220283 (-) 1161 WP_003233867.1 lysozyme inhibitor LprI family protein -
  C7M29_RS01180 (C7M29_00233) - 220486..220923 (-) 438 WP_015252628.1 hypothetical protein -
  C7M29_RS01185 (C7M29_00234) - 221138..222144 (-) 1007 Protein_217 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 43983.29 Da        Isoelectric Point: 5.8837

>NTDB_id=240296 C7M29_RS01170 WP_019712801.1 217847..218977(-) (rapC) [Bacillus subtilis strain SRCM102751]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVKQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGQTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNNPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLETALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=240296 C7M29_RS01170 WP_019712801.1 217847..218977(-) (rapC) [Bacillus subtilis strain SRCM102751]
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGATTCTGAAAGCGGAGGTGAAGCAGGACATTCAGCAAATGGAAGAAGATCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGTCACCAGCTGATGCTTGATTATTTGGAGCCGGGACAAACATACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGTGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGATATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGATATTGAGAAAGCCGAATTCCATTTTAAAGTGGCAGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTAGACATTTATCAAAACAATCCCCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGACGGCGCTGGAATTGGCAATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATCGCGAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTCCCTGATCTGCTTCCGAAAGTCTTGTTTGGGTTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCTGCTGCGTTTTATCGGAAAGTGCTAAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.691

100

0.407
  rapF Bacillus subtilis subsp. subtilis str. 168

40.053

100

0.402