Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C7M28_RS14765 Genome accession   NZ_CP028215
Coordinates   2825474..2826115 (+) Length   213 a.a.
NCBI ID   WP_003244318.1    Uniprot ID   P96686
Organism   Bacillus subtilis strain SRCM102750     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2820474..2831115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M28_RS14735 (C7M28_02902) ydfE 2821669..2822292 (-) 624 WP_069703982.1 flavin reductase family protein -
  C7M28_RS14740 (C7M28_02903) ydfF 2822382..2823062 (+) 681 WP_003244115.1 winged helix-turn-helix domain-containing protein -
  C7M28_RS14745 (C7M28_02904) ydfG 2823142..2823585 (-) 444 WP_003242768.1 carboxymuconolactone decarboxylase family protein -
  C7M28_RS14750 (C7M28_02905) - 2823671..2823850 (-) 180 WP_010886421.1 hypothetical protein -
  C7M28_RS14755 - 2823847..2823990 (-) 144 WP_003243880.1 hypothetical protein -
  C7M28_RS14760 (C7M28_02906) ydfH 2824258..2825481 (+) 1224 WP_010886422.1 two-component system sensor histidine kinase YdfH -
  C7M28_RS14765 (C7M28_02907) vraR 2825474..2826115 (+) 642 WP_003244318.1 two-component system response regulator YdfI Regulator
  C7M28_RS14770 (C7M28_02908) pleJ 2826231..2828405 (+) 2175 WP_003243548.1 MMPL family transporter -
  C7M28_RS14775 (C7M28_02909) cesA 2828817..2829719 (-) 903 WP_003242638.1 carboxylesterase -
  C7M28_RS14780 (C7M28_02910) ydfK 2829921..2830610 (-) 690 WP_003242513.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23973.92 Da        Isoelectric Point: 5.4183

>NTDB_id=240233 C7M28_RS14765 WP_003244318.1 2825474..2826115(+) (vraR) [Bacillus subtilis strain SRCM102750]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDTPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRNETQLTEKEVIVLKAI
AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=240233 C7M28_RS14765 WP_003244318.1 2825474..2826115(+) (vraR) [Bacillus subtilis strain SRCM102750]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTAGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATACCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAAGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCCATCAGAGGAAATGTGCTATTGCAGCCTGATATCCTTAAACGTCTGCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAATGAGACGCAGCTGACAGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCGTCTCTGAGCGAACAGTAAAGTCCAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P96686

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.493

99.061

0.362