Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   C7M28_RS14215 Genome accession   NZ_CP028215
Coordinates   2732186..2732620 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain SRCM102750     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2727186..2737620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M28_RS14185 (C7M28_02793) ydaD 2727833..2728693 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  C7M28_RS14190 (C7M28_02794) lyxE 2728709..2729212 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  C7M28_RS14195 (C7M28_02795) ydaF 2729300..2729851 (+) 552 WP_014478866.1 GNAT family protein -
  C7M28_RS14200 (C7M28_02796) ydaG 2729929..2730351 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  C7M28_RS14205 (C7M28_02797) amj 2730857..2731666 (+) 810 WP_032722918.1 lipid II flippase Amj -
  C7M28_RS14210 (C7M28_02798) ydzA 2731711..2732001 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  C7M28_RS14215 (C7M28_02799) lrpC 2732186..2732620 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  C7M28_RS14220 (C7M28_02800) topB 2732685..2734868 (+) 2184 WP_029317313.1 DNA topoisomerase III -
  C7M28_RS14225 (C7M28_02801) ephJ 2735070..2736158 (+) 1089 WP_003246551.1 lipoprotein -
  C7M28_RS14230 (C7M28_02802) epsK 2736139..2736990 (+) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=240232 C7M28_RS14215 WP_003246585.1 2732186..2732620(+) (lrpC) [Bacillus subtilis strain SRCM102750]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=240232 C7M28_RS14215 WP_003246585.1 2732186..2732620(+) (lrpC) [Bacillus subtilis strain SRCM102750]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTTAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1