Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   C7M28_RS12120 Genome accession   NZ_CP028215
Coordinates   2318661..2318891 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain SRCM102750     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2313661..2323891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M28_RS12090 (C7M28_02380) ridA 2313825..2314202 (+) 378 WP_046380721.1 2-iminobutanoate/2-iminopropanoate deaminase -
  C7M28_RS12095 (C7M28_02381) spoVG 2314397..2314690 (+) 294 WP_003218346.1 septation regulator SpoVG -
  C7M28_RS12100 (C7M28_02382) glmU 2314883..2316253 (+) 1371 WP_046380722.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  C7M28_RS12105 (C7M28_02383) prsS 2316276..2317229 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  C7M28_RS12110 (C7M28_02384) rplYB 2317314..2317928 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  C7M28_RS12115 (C7M28_02385) pth 2318035..2318601 (+) 567 WP_046380723.1 aminoacyl-tRNA hydrolase -
  C7M28_RS12120 (C7M28_02386) subA/fin 2318661..2318891 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  C7M28_RS12125 (C7M28_02387) mfd 2318961..2322494 (+) 3534 WP_046380724.1 transcription-repair coupling factor -
  C7M28_RS12130 (C7M28_02388) spoVT 2322630..2323166 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=240215 C7M28_RS12120 WP_003243417.1 2318661..2318891(+) (subA/fin) [Bacillus subtilis strain SRCM102750]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=240215 C7M28_RS12120 WP_003243417.1 2318661..2318891(+) (subA/fin) [Bacillus subtilis strain SRCM102750]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1