Detailed information NTG0240204

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PNC201_RS04230
• Genome accession: NZ_CP022522
• Coordinates: 1043177..1044055 (-)
• Length: 292 a.a.
• NCBI ID: WP_102056263.1
• Uniprot ID: -
• Organism: Pseudoalteromonas sp. NC201
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1038177..1049055

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PNC201_RS04205 (PNC201_04175)	-	1038208..1038846 (+)	639	WP_045989837.1	alpha/beta family hydrolase	-
PNC201_RS04210 (PNC201_04180)	-	1038839..1039207 (+)	369	WP_102056260.1	DUF423 domain-containing protein	-
PNC201_RS04215 (PNC201_04185)	rlmM	1039221..1040306 (+)	1086	WP_102056261.1	23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM	-
PNC201_RS04220 (PNC201_04190)	pilB	1040752..1042428 (-)	1677	WP_010607343.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PNC201_RS04225 (PNC201_04195)	coaE	1042538..1043167 (-)	630	WP_102056262.1	dephospho-CoA kinase	-
PNC201_RS04230 (PNC201_04200)	pilD	1043177..1044055 (-)	879	WP_102056263.1	A24 family peptidase	Machinery gene
PNC201_RS04235 (PNC201_04205)	pilC	1044189..1045421 (-)	1233	WP_102056264.1	type II secretion system F family protein	Machinery gene
PNC201_RS04240 (PNC201_04210)	-	1045425..1045898 (-)	474	WP_102056265.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
PNC201_RS04245 (PNC201_04215)	-	1045885..1046304 (-)	420	WP_102056266.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
PNC201_RS04250 (PNC201_04220)	nadC	1046964..1047806 (-)	843	WP_102057843.1	carboxylating nicotinate-nucleotide diphosphorylase	-
PNC201_RS04255 (PNC201_04225)	ampD	1048512..1049054 (+)	543	WP_102056267.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-

Sequence

Protein

• Length: 292 a.a.
• Molecular weight: 32546.87 Da
• Isoelectric Point: 5.7478

>NTDB_id=240204 PNC201_RS04230 WP_102056263.1 1043177..1044055(-) (pilD) [Pseudoalteromonas sp. NC201]
MQDIINLMQTQLWYWLLTVGLVSLCIGSFLNVVILRLPKMMKQSWQSECRVLLADELPKQTTEAPVFNLIKPNSQCPSCK
TPIKAWQNIPLISWLLLKGKCNHCDASISVRYPLVELTTALLSTWVAWHFGATLEATLYILITWVLVALTVIDIDEMLLP
DQLTLPTLWLVLVASCFGVGIEPNDAIIGAAIGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAIFGALMGWQAILTIVLLS
SLVGAIIGSIQLSVQGRDKATPIPFGPYLAIAGWITLMYGEQLQLWYVNLIM

Nucleotide

• Length: 879 bp

>NTDB_id=240204 PNC201_RS04230 WP_102056263.1 1043177..1044055(-) (pilD) [Pseudoalteromonas sp. NC201]
ATGCAAGATATTATCAACTTGATGCAAACCCAGTTATGGTATTGGTTACTCACTGTCGGACTCGTTAGTCTTTGCATCGG
TAGCTTTCTCAATGTGGTTATTCTTCGCTTACCTAAAATGATGAAGCAGAGCTGGCAATCAGAATGTCGCGTGTTGCTCG
CCGATGAGCTACCCAAACAAACCACTGAAGCACCCGTATTTAATTTAATTAAACCAAATTCTCAATGCCCGAGCTGTAAA
ACGCCGATTAAAGCGTGGCAAAACATTCCACTGATCAGCTGGCTATTATTAAAAGGCAAATGCAACCACTGCGACGCGTC
AATCTCTGTCCGCTATCCTTTGGTGGAGCTAACAACCGCCCTACTCTCCACATGGGTTGCGTGGCATTTTGGTGCCACTT
TAGAAGCTACTCTGTACATTTTAATTACTTGGGTGTTAGTCGCACTTACGGTTATCGATATCGACGAAATGTTGCTGCCC
GATCAGTTAACACTACCAACCTTATGGTTAGTACTGGTTGCCAGTTGTTTTGGTGTTGGCATCGAGCCCAATGATGCCAT
CATTGGTGCGGCCATAGGTTATTTGAGTTTATGGAGTGTGTATTGGCTCTTTAAATTACTTACAGGTAAAGAAGGCATGG
GCTATGGCGACTTTAAACTGCTAGCCATCTTTGGGGCATTGATGGGCTGGCAAGCAATTCTAACCATAGTGCTACTTTCA
AGCCTGGTCGGGGCAATTATTGGTAGCATCCAATTAAGTGTTCAAGGCAGAGATAAAGCCACCCCAATCCCATTTGGCCC
TTACTTAGCCATCGCAGGCTGGATCACCTTAATGTACGGCGAGCAGCTGCAGCTGTGGTACGTAAACTTAATAATGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (141-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-130)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	53.633	98.973	0.531
pilD	Acinetobacter nosocomialis M2	53.633	98.973	0.531
pilD	Vibrio cholerae strain A1552	52.5	95.89	0.503
pilD	Vibrio campbellii strain DS40M4	50.515	99.658	0.503
pilD	Neisseria gonorrhoeae MS11	43.561	90.411	0.394