Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   C7M27_RS21380 Genome accession   NZ_CP028213
Coordinates   4125356..4126489 (+) Length   377 a.a.
NCBI ID   WP_064671479.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102749     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 4120356..4131489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M27_RS21350 (C7M27_04218) ywmC 4121152..4121835 (+) 684 WP_003227700.1 VWA domain-containing protein -
  C7M27_RS21355 - 4121965..4122105 (+) 141 WP_014478246.1 hypothetical protein -
  C7M27_RS21360 (C7M27_04219) ywmD 4122158..4122832 (+) 675 WP_003243553.1 VWA domain-containing protein -
  C7M27_RS21365 (C7M27_04220) - 4122927..4123088 (+) 162 WP_021480806.1 hypothetical protein -
  C7M27_RS21370 (C7M27_04221) fdhD 4123334..4124122 (+) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  C7M27_RS21375 (C7M27_04222) moaA 4124138..4125163 (+) 1026 WP_064671478.1 GTP 3',8-cyclase MoaA -
  C7M27_RS21380 (C7M27_04223) rapC 4125356..4126489 (+) 1134 WP_064671479.1 response regulator aspartate phosphatase RapB Regulator
  C7M27_RS21385 (C7M27_04224) - 4126642..4127121 (+) 480 WP_003244390.1 hypothetical protein -
  C7M27_RS21390 (C7M27_04225) csbD 4127194..4127382 (+) 189 WP_003227718.1 stress response protein CsbD -
  C7M27_RS22245 - 4127595..4127819 (+) 225 Protein_4199 urea ABC transporter substrate-binding protein -
  C7M27_RS21400 - 4128041..4128201 (+) 161 Protein_4200 hypothetical protein -
  C7M27_RS21405 (C7M27_04227) ureA 4128396..4128713 (+) 318 WP_003227724.1 urease subunit gamma -
  C7M27_RS21410 (C7M27_04228) ureB 4128710..4129084 (+) 375 WP_128740800.1 urease subunit beta -
  C7M27_RS21415 (C7M27_04229) ureC 4129081..4130790 (+) 1710 WP_128740799.1 urease subunit alpha -
  C7M27_RS21420 (C7M27_04230) ywnA 4130925..4131326 (+) 402 WP_003227734.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45083.22 Da        Isoelectric Point: 4.7975

>NTDB_id=240135 C7M27_RS21380 WP_064671479.1 4125356..4126489(+) (rapC) [Bacillus subtilis strain SRCM102749]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSQAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYREAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=240135 C7M27_RS21380 WP_064671479.1 4125356..4126489(+) (rapC) [Bacillus subtilis strain SRCM102749]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATAGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTAATCGGATCAGCCCTTTATAACATTGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCCAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTACGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCCTATTTCAGTCA
TCGCGAACAATATAGAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGCT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.368

100

0.427
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424