Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LFZ21_RS00790 Genome accession   NZ_CP022500
Coordinates   173131..173736 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Kentucky str. SA20030505     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 168131..178736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFZ21_RS00770 (LFZ21_00755) - 168520..170280 (-) 1761 WP_000156446.1 AAA family ATPase -
  LFZ21_RS00775 (LFZ21_00760) matP 170466..170918 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  LFZ21_RS00780 (LFZ21_00765) ompA 170990..172048 (-) 1059 WP_001747676.1 porin OmpA -
  LFZ21_RS00785 (LFZ21_00770) sulA 172405..172914 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  LFZ21_RS00790 (LFZ21_00775) sxy/tfoX 173131..173736 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  LFZ21_RS00795 (LFZ21_00780) yccS 173723..175876 (-) 2154 WP_000950871.1 YccS family putative transporter -
  LFZ21_RS00800 (LFZ21_00785) - 175895..176341 (-) 447 WP_001261222.1 YccF domain-containing protein -
  LFZ21_RS00805 (LFZ21_00790) helD 176465..178519 (+) 2055 WP_000420502.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=240123 LFZ21_RS00790 WP_001202375.1 173131..173736(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Kentucky str. SA20030505]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=240123 LFZ21_RS00790 WP_001202375.1 173131..173736(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Kentucky str. SA20030505]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment