Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CHD73_RS13730 Genome accession   NZ_CP022497
Coordinates   2766325..2766930 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Manhattan strain SA20084699     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2761325..2771930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHD73_RS13710 (CHD73_13720) - 2761720..2763480 (-) 1761 WP_000156454.1 Lon protease family protein -
  CHD73_RS13715 (CHD73_13725) matP 2763666..2764118 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  CHD73_RS13720 (CHD73_13730) ompA 2764190..2765242 (-) 1053 WP_001670727.1 porin OmpA -
  CHD73_RS13725 (CHD73_13735) sulA 2765599..2766108 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  CHD73_RS13730 (CHD73_13740) sxy/tfoX 2766325..2766930 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  CHD73_RS13735 (CHD73_13745) yccS 2766917..2769070 (-) 2154 WP_000950881.1 YccS family putative transporter -
  CHD73_RS13740 (CHD73_13750) - 2769089..2769535 (-) 447 WP_001617378.1 YccF domain-containing protein -
  CHD73_RS13745 (CHD73_13755) helD 2769659..2771713 (+) 2055 WP_093998279.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=240113 CHD73_RS13730 WP_001202375.1 2766325..2766930(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Manhattan strain SA20084699]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=240113 CHD73_RS13730 WP_001202375.1 2766325..2766930(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Manhattan strain SA20084699]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment