Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CHD02_RS23495 Genome accession   NZ_CP022494
Coordinates   4709807..4710412 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Derby strain SA20035215     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4704807..4715412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHD02_RS23480 (CHD02_23995) helD 4705024..4707078 (-) 2055 WP_080091251.1 DNA helicase IV -
  CHD02_RS23485 (CHD02_24000) - 4707202..4707648 (+) 447 WP_001261222.1 YccF domain-containing protein -
  CHD02_RS23490 (CHD02_24005) yccS 4707667..4709820 (+) 2154 WP_000950876.1 YccS family putative transporter -
  CHD02_RS23495 (CHD02_24010) sxy/tfoX 4709807..4710412 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  CHD02_RS23500 (CHD02_24015) sulA 4710629..4711138 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  CHD02_RS23505 (CHD02_24020) ompA 4711495..4712547 (+) 1053 WP_001670727.1 porin OmpA -
  CHD02_RS23510 (CHD02_24025) matP 4712619..4713071 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  CHD02_RS23515 (CHD02_24030) - 4713257..4715017 (+) 1761 WP_000156448.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=240100 CHD02_RS23495 WP_001202375.1 4709807..4710412(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Derby strain SA20035215]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=240100 CHD02_RS23495 WP_001202375.1 4709807..4710412(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Derby strain SA20035215]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment