Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C7M27_RS16215 Genome accession   NZ_CP028213
Coordinates   3122476..3123117 (-) Length   213 a.a.
NCBI ID   WP_003244318.1    Uniprot ID   P96686
Organism   Bacillus subtilis strain SRCM102749     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3117476..3128117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M27_RS16200 (C7M27_03203) ydfK 3117979..3118668 (+) 690 WP_015252719.1 DUF554 domain-containing protein -
  C7M27_RS16205 (C7M27_03204) cesA 3118871..3119773 (+) 903 WP_128740058.1 carboxylesterase -
  C7M27_RS16210 (C7M27_03205) pleJ 3120186..3122360 (-) 2175 WP_128740057.1 MMPL family transporter -
  C7M27_RS16215 (C7M27_03206) vraR 3122476..3123117 (-) 642 WP_003244318.1 two-component system response regulator YdfI Regulator
  C7M27_RS16220 (C7M27_03207) ydfH 3123110..3124333 (-) 1224 WP_128740056.1 two-component system sensor histidine kinase YdfH -
  C7M27_RS16225 - 3124601..3124744 (+) 144 WP_014478971.1 hypothetical protein -
  C7M27_RS16230 (C7M27_03208) - 3124741..3124920 (+) 180 WP_010886421.1 hypothetical protein -
  C7M27_RS16235 (C7M27_03209) ydfG 3125006..3125449 (+) 444 WP_128740055.1 carboxymuconolactone decarboxylase family protein -
  C7M27_RS16240 (C7M27_03210) ydfF 3125514..3126194 (-) 681 WP_003244115.1 winged helix-turn-helix domain-containing protein -
  C7M27_RS16245 (C7M27_03211) ydfE 3126284..3126907 (+) 624 WP_128740054.1 flavin reductase family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23973.92 Da        Isoelectric Point: 5.4183

>NTDB_id=240099 C7M27_RS16215 WP_003244318.1 3122476..3123117(-) (vraR) [Bacillus subtilis strain SRCM102749]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDTPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRNETQLTEKEVIVLKAI
AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=240099 C7M27_RS16215 WP_003244318.1 3122476..3123117(-) (vraR) [Bacillus subtilis strain SRCM102749]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATACCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAAGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCCATCAGAGGAAATGTGCTATTGCAGCCTGATATCCTTAAACGTCTGCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAATGAGACGCAGCTGACAGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCGTCTCTGAGCGAACAGTAAAGTCCAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P96686

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.493

99.061

0.362