Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   C7M27_RS15490 Genome accession   NZ_CP028213
Coordinates   2973612..2974742 (-) Length   376 a.a.
NCBI ID   WP_128740092.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102749     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2968612..2979742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M27_RS15445 (C7M27_03053) cotJC 2968698..2969267 (-) 570 WP_003233850.1 spore coat protein CotJC -
  C7M27_RS15450 (C7M27_03054) cotJB 2969282..2969545 (-) 264 WP_003219491.1 spore coat protein CotJB -
  C7M27_RS15455 (C7M27_03055) cotJA 2969529..2969777 (-) 249 WP_003219489.1 spore coat-associated protein CotJA -
  C7M27_RS15460 (C7M27_03056) yesF 2969904..2970772 (-) 869 Protein_3069 NAD-dependent epimerase/dehydratase family protein -
  C7M27_RS15465 (C7M27_03057) yesE 2970769..2971212 (-) 444 WP_003233857.1 nuclear transport factor 2 family protein -
  C7M27_RS15470 (C7M27_03058) yezE 2971291..2971875 (-) 585 WP_038427498.1 TetR/AcrR family transcriptional regulator -
  C7M27_RS15475 (C7M27_03059) yeeK 2971990..2972436 (-) 447 WP_128740093.1 spore coat protein YeeK -
  C7M27_RS15480 (C7M27_03060) yeeI 2972570..2973289 (-) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  C7M27_RS15485 (C7M27_03061) phrH 2973449..2973622 (-) 174 WP_003242557.1 phosphatase RapH inhibitor PhrH -
  C7M27_RS15490 (C7M27_03062) rapC 2973612..2974742 (-) 1131 WP_128740092.1 response regulator aspartate phosphatase RapH Regulator
  C7M27_RS15495 (C7M27_03063) - 2974904..2975917 (-) 1014 WP_128740091.1 hypothetical protein -
  C7M27_RS15500 (C7M27_03064) - 2976023..2976943 (-) 921 WP_064671871.1 DUF5655 domain-containing protein -
  C7M27_RS15505 (C7M27_03065) - 2976956..2977294 (-) 339 WP_021481280.1 hypothetical protein -
  C7M27_RS15510 (C7M27_03066) dtxF 2977461..2979470 (+) 2010 WP_103804468.1 ribonuclease YeeF family protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 43929.20 Da        Isoelectric Point: 5.7157

>NTDB_id=240097 C7M27_RS15490 WP_128740092.1 2973612..2974742(-) (rapC) [Bacillus subtilis strain SRCM102749]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGQTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPVVSDDIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=240097 C7M27_RS15490 WP_128740092.1 2973612..2974742(-) (rapC) [Bacillus subtilis strain SRCM102749]
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGATTCTGAAAGCGGAGGTGGAGCAGGACATTCAGCAAATGGAAGAAGACCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTATTTGGAGCCGGGACAAACATACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGATATTATCGCGAGGCGGAGAAAGAACTGCCGGTTGTGTCAG
ATGATATTGAGAAAGCCGAATTCCATTTTAAAGTGGCAGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTGGACATTTATCAAAACCATCCTCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGGCGGCGCTTGAATTGGCAATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATTGCAAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCAGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_7)

(222-251)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.426

100

0.404
  rapF Bacillus subtilis subsp. subtilis str. 168

39.788

100

0.399