Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   C7M27_RS12870 Genome accession   NZ_CP028213
Coordinates   2469323..2471152 (-) Length   609 a.a.
NCBI ID   WP_201755714.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102749     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2464323..2476152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M27_RS12835 (C7M27_02537) yjbM 2464776..2465411 (-) 636 WP_003245294.1 GTP diphosphokinase -
  C7M27_RS12840 (C7M27_02538) - 2465440..2465808 (-) 369 WP_021479543.1 hypothetical protein -
  C7M27_RS12845 (C7M27_02539) yjbK 2465933..2466505 (+) 573 WP_101501998.1 CYTH domain-containing protein -
  C7M27_RS12850 (C7M27_02540) cwlQ 2466520..2467254 (+) 735 WP_250620093.1 bifunctional muramidase/murein lytic transglycosylase -
  C7M27_RS12855 (C7M27_02541) bhbI 2467509..2467907 (+) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  C7M27_RS12860 (C7M27_02542) spxH 2467904..2468803 (+) 900 WP_003245184.1 protease adaptor protein SpxH -
  C7M27_RS12865 (C7M27_02543) - 2469118..2469285 (+) 168 WP_003244944.1 hypothetical protein -
  C7M27_RS12870 (C7M27_02544) pepF 2469323..2471152 (-) 1830 WP_201755714.1 oligoendopeptidase F Regulator
  C7M27_RS12875 (C7M27_02545) coiA 2471382..2472503 (-) 1122 WP_250634842.1 competence protein CoiA Machinery gene
  C7M27_RS12880 - 2472577..2472699 (+) 123 WP_003245684.1 hypothetical protein -
  C7M27_RS12885 (C7M27_02546) mecA 2472694..2473350 (-) 657 WP_003232942.1 adaptor protein MecA Regulator
  C7M27_RS12890 - 2473317..2473457 (-) 141 WP_119122854.1 hypothetical protein -
  C7M27_RS12895 (C7M27_02547) yjbE 2473627..2474283 (+) 657 WP_128740217.1 TerC family protein -
  C7M27_RS12900 (C7M27_02548) spx 2474329..2474724 (-) 396 WP_014476435.1 transcriptional regulator Spx -
  C7M27_RS12905 (C7M27_02549) yjbC 2474905..2475483 (-) 579 WP_003224597.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 70055.92 Da        Isoelectric Point: 5.1562

>NTDB_id=240072 C7M27_RS12870 WP_201755714.1 2469323..2471152(-) (pepF) [Bacillus subtilis strain SRCM102749]
MAEEKKANQLPDRSEVKAEDTWRLEDIFPSDEAWNKEFQAVKELIPNLSKYKGKLADSADHLYEALTYQDKVMERLGRLY
TYAHMRSDQDTGNSFYQGLNDKAGNLYTQAASATAYLVPEILSIEEDKLQQFILEKEELKLYSHAIEEITKERPHVLSEK
EEALLAEASEVLGSSSNTFSVLNNADITFPSIKDEDGNEKQITHGNFINFLESENREVRKNAFDAVYKTYGQYKNTMATT
LSGTVKKDNFYARVKKYKSAREAALSNNSIPEEVYDNLVKTINKHLPLLHRYIALRKKVLELDEVHIYDLYTPLVKDAGM
KVTYEEAKDYMLKGLAPLGEEYASILKEGLENRWVDVYENKGKRNGAYSSGAYGTNPYILMNWHNNVNNLFTLVHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTTNEALLGEYLLNNLEDEKQRLYILNHMLEGFRGTVFRQTMFAEFEHLIHTKAQ
EGEPLTPELLTNVYYDLNKKYFGDGMVIDKEIGLEWSRIPHFYYNYYVYQYATGYSAAQALGSQILKEGKPAVDRYIDFL
KAGSSQYPIDVLKKAGVDMTSPEPIEAACKMFEEKLDEMEELLMKVKQS

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=240072 C7M27_RS12870 WP_201755714.1 2469323..2471152(-) (pepF) [Bacillus subtilis strain SRCM102749]
ATGGCTGAGGAAAAAAAAGCAAACCAACTGCCTGACAGAAGTGAGGTAAAGGCAGAAGACACATGGAGACTTGAGGATAT
TTTTCCTAGTGATGAGGCCTGGAATAAAGAATTTCAAGCTGTAAAAGAATTAATTCCGAATTTATCTAAGTATAAAGGAA
AGCTGGCAGATTCAGCTGATCATTTATACGAGGCTCTTACGTATCAAGATAAAGTGATGGAGCGGCTGGGTAGGCTGTAC
ACATATGCGCATATGCGCTCAGACCAGGATACTGGGAACTCCTTTTACCAGGGGCTGAATGACAAGGCGGGAAACCTGTA
TACACAGGCCGCAAGCGCGACAGCTTATTTGGTTCCGGAGATTTTATCCATAGAAGAAGACAAACTGCAGCAGTTCATTC
TTGAAAAAGAAGAATTAAAGCTGTACTCTCATGCGATTGAGGAGATTACAAAGGAACGTCCGCATGTGCTGAGCGAGAAG
GAAGAGGCGCTGCTTGCTGAAGCCTCCGAGGTACTGGGATCATCTTCAAATACATTCAGCGTGTTAAATAACGCAGATAT
AACGTTTCCGTCCATTAAAGACGAAGATGGGAATGAAAAACAGATCACTCACGGCAACTTTATTAATTTCTTGGAAAGTG
AAAACCGTGAAGTCCGCAAAAATGCGTTTGACGCAGTGTATAAAACGTACGGACAATATAAAAACACAATGGCCACGACG
CTAAGCGGCACTGTGAAAAAGGACAACTTCTACGCGAGAGTGAAAAAGTACAAGTCCGCGCGTGAGGCTGCGCTTTCTAA
CAACAGTATTCCAGAGGAAGTATACGATAACCTTGTTAAGACGATTAATAAGCATTTGCCGCTCCTGCACCGCTATATCG
CGCTAAGAAAGAAAGTGCTTGAGCTTGATGAAGTGCATATCTATGACCTGTATACACCGCTTGTGAAAGATGCTGGGATG
AAGGTGACATACGAGGAAGCCAAAGATTACATGCTGAAAGGCCTTGCACCTTTAGGGGAAGAATATGCCTCTATCCTAAA
AGAAGGACTGGAAAACCGCTGGGTGGACGTTTACGAAAATAAAGGCAAACGCAATGGGGCTTATTCATCAGGAGCTTACG
GCACGAATCCGTATATTTTGATGAACTGGCATAATAACGTCAATAATCTCTTTACGCTCGTGCACGAGTTTGGACATTCC
GTACACAGCTACTATACGAGAAAGCACCAGCCTTATCCATACGGCAATTACAGTATCTTTGTCGCGGAAGTTGCCTCTAC
GACAAATGAAGCGCTCCTTGGCGAATATTTGCTGAACAATTTAGAGGATGAAAAACAGCGCTTATATATTCTCAACCATA
TGCTTGAGGGCTTCAGGGGAACGGTCTTCAGACAAACGATGTTCGCTGAATTTGAACATCTGATCCATACAAAGGCGCAA
GAAGGCGAGCCGCTTACACCTGAGCTTCTGACAAATGTCTATTACGACCTGAATAAAAAGTATTTTGGAGACGGCATGGT
GATTGATAAGGAAATCGGCCTTGAATGGTCGCGTATTCCGCACTTCTATTACAATTACTATGTGTATCAGTATGCGACAG
GGTACAGCGCTGCCCAAGCATTAGGCAGCCAGATTTTGAAGGAAGGAAAGCCGGCGGTTGACCGTTATATTGACTTCCTG
AAAGCGGGAAGCTCACAATACCCGATTGATGTCCTGAAAAAAGCGGGTGTTGATATGACGTCTCCAGAGCCAATCGAAGC
CGCGTGCAAAATGTTTGAAGAAAAACTTGATGAAATGGAAGAGCTGCTGATGAAAGTCAAGCAGTCTTAA

Domains

Predicted by InterProScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.822

97.537

0.476