Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   C7M27_RS12100 Genome accession   NZ_CP028213
Coordinates   2341881..2343017 (-) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102749     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2336881..2348017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M27_RS12060 (C7M27_02380) xre 2337213..2337554 (+) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -
  C7M27_RS12065 (C7M27_02381) xkdA 2337717..2338313 (+) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  C7M27_RS12070 (C7M27_02382) xpdC 2338357..2339193 (-) 837 WP_003245071.1 manganese catalase family protein -
  C7M27_RS12075 (C7M27_02383) pghB 2339270..2339872 (-) 603 WP_128740271.1 poly-gamma-glutamate hydrolase family protein -
  C7M27_RS12080 (C7M27_02384) yjqA 2339978..2340355 (+) 378 WP_124059756.1 PH domain-containing protein -
  C7M27_RS12085 (C7M27_02385) xlyB 2340395..2341348 (-) 954 WP_041850941.1 N-acetylmuramoyl-L-alanine amidase -
  C7M27_RS12090 (C7M27_02386) yjpA 2341469..2341726 (+) 258 WP_003232731.1 YciI family protein -
  C7M27_RS12095 (C7M27_02387) phrA 2341757..2341891 (-) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  C7M27_RS12100 (C7M27_02388) rapC 2341881..2343017 (-) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  C7M27_RS12105 (C7M27_02389) yjoB 2343162..2344433 (-) 1272 WP_003232739.1 ATPase YjoB -
  C7M27_RS12110 (C7M27_02390) bstD 2344582..2345046 (+) 465 WP_014479541.1 DinB family protein -
  C7M27_RS12115 (C7M27_02391) yjnA 2345272..2346036 (+) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -
  C7M27_RS12120 (C7M27_02392) uxaA 2346075..2347568 (-) 1494 WP_049140756.1 altronate dehydratase family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=240071 C7M27_RS12100 WP_015252291.1 2341881..2343017(-) (rapC) [Bacillus subtilis strain SRCM102749]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=240071 C7M27_RS12100 WP_015252291.1 2341881..2343017(-) (rapC) [Bacillus subtilis strain SRCM102749]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTACTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTATAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTGTATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418