Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   C7M27_RS09730 Genome accession   NZ_CP028213
Coordinates   1887291..1887722 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain SRCM102749     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1882291..1892722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M27_RS09720 (C7M27_01914) hexA 1883775..1886351 (-) 2577 WP_070548989.1 DNA mismatch repair protein MutS Machinery gene
  C7M27_RS09725 (C7M27_01915) cotE 1886484..1887029 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  C7M27_RS09730 (C7M27_01916) ymcA 1887291..1887722 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  C7M27_RS09735 (C7M27_01917) miaB 1887724..1889253 (-) 1530 WP_014664026.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  C7M27_RS09740 (C7M27_01918) kbl 1889401..1890579 (-) 1179 WP_128740334.1 glycine C-acetyltransferase -
  C7M27_RS09745 (C7M27_01919) tdh 1890592..1891635 (-) 1044 WP_049140039.1 L-threonine 3-dehydrogenase -
  C7M27_RS09750 (C7M27_01920) spoVS 1891900..1892160 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=240050 C7M27_RS09730 WP_003231834.1 1887291..1887722(-) (ymcA) [Bacillus subtilis strain SRCM102749]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=240050 C7M27_RS09730 WP_003231834.1 1887291..1887722(-) (ymcA) [Bacillus subtilis strain SRCM102749]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTATTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGTTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1