Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   C7M27_RS06540 Genome accession   NZ_CP028213
Coordinates   1258209..1259699 (+) Length   496 a.a.
NCBI ID   WP_128740552.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102749     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1253209..1264699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M27_RS06520 (C7M27_01288) serA 1253959..1255536 (-) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -
  C7M27_RS06525 (C7M27_01289) fmnP 1256033..1256605 (+) 573 WP_004399159.1 riboflavin transporter FmnP -
  C7M27_RS06530 (C7M27_01290) fdxA 1256645..1256893 (-) 249 WP_003225461.1 ferredoxin -
  C7M27_RS06535 (C7M27_01291) gmmB 1257158..1258216 (+) 1059 WP_014477210.1 helix-turn-helix domain-containing protein -
  C7M27_RS06540 (C7M27_01292) recS 1258209..1259699 (+) 1491 WP_128740552.1 ATP-dependent DNA helicase RecQ Machinery gene
  C7M27_RS06545 (C7M27_01293) ypbD 1259741..1260328 (+) 588 WP_284691005.1 CPBP family intramembrane glutamic endopeptidase -
  C7M27_RS06550 (C7M27_01294) claE 1260279..1261010 (+) 732 WP_072173297.1 LysM peptidoglycan-binding domain-containing protein -
  C7M27_RS06555 (C7M27_01295) ypbF 1261073..1261516 (+) 444 WP_003230531.1 YpbF family protein -
  C7M27_RS06560 (C7M27_01296) ypbG 1261604..1262383 (+) 780 WP_003230532.1 metallophosphoesterase -
  C7M27_RS06565 (C7M27_01297) mecB 1262542..1263126 (+) 585 WP_003230533.1 genetic competence negative regulator -
  C7M27_RS06570 (C7M27_01298) gudB 1263282..1264556 (+) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56516.10 Da        Isoelectric Point: 6.3922

>NTDB_id=240040 C7M27_RS06540 WP_128740552.1 1258209..1259699(+) (recS) [Bacillus subtilis strain SRCM102749]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLEGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPCVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSYCGFDLSLYEQKGERSKMAPLDSWS
SELHRIFNLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=240040 C7M27_RS06540 WP_128740552.1 1258209..1259699(+) (recS) [Bacillus subtilis strain SRCM102749]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGAGGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTGAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATGTGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGACACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTCGA
GCTGCAGCATGCTGTACGGCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGCCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCTGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCTGATATCAGATATGTAATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGAAGAGCG
GGCCGCGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTGATCCGTGTGCTAGAGAAGACAGAGGAGCGGGATGAGAGAAGGCTTC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTACTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCCGATGACGGAAACCTCCCGTGCT
GTTCATATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAACTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(20-180)

Helicase conserved C-terminal domain (Helicase_C)

(215-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

98.992

100

0.99