Detailed information NTG0239928

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: C7M26_RS12710
• Genome accession: NZ_CP028212
• Coordinates: 2425914..2427035 (-)
• Length: 373 a.a.
• NCBI ID: WP_003246478.1
• Uniprot ID: O34327
• Organism: Bacillus subtilis strain SRCM102748
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2420914..2432035

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C7M26_RS12690 (C7M26_02502)	znuC	2421423..2422118 (-)	696	WP_003234730.1	zinc ABC transporter ATP-binding protein ZnuC	-
C7M26_RS12695 (C7M26_02503)	znuA	2422174..2423133 (-)	960	WP_003234733.1	metal ABC transporter substrate-binding protein	-
C7M26_RS12700 (C7M26_02504)	ycdG	2423321..2425006 (-)	1686	WP_003234736.1	alpha-glucosidase	-
C7M26_RS12705 (C7M26_02505)	ycdF	2425031..2425807 (-)	777	WP_019712418.1	SDR family oxidoreductase	-
C7M26_RS12710 (C7M26_02506)	rapF	2425914..2427035 (-)	1122	WP_003246478.1	response regulator aspartate phosphatase RapJ	Regulator
C7M26_RS12715 (C7M26_02507)	cwlK	2427158..2427661 (+)	504	WP_009966473.1	peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	-
C7M26_RS12720 (C7M26_02508)	ycdC	2427669..2429030 (-)	1362	WP_010886397.1	YcdB/YcdC domain-containing protein	-
C7M26_RS12725 (C7M26_02509)	ycdB	2429217..2430635 (-)	1419	WP_003246352.1	YcdB/YcdC domain-containing protein	-
C7M26_RS12730	-	2430809..2430940 (+)	132	WP_120363245.1	hypothetical protein	-
C7M26_RS12735 (C7M26_02510)	ycdA	2430963..2432027 (+)	1065	WP_003234750.1	DUF4352 domain-containing protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44414.31 Da
• Isoelectric Point: 4.8371

>NTDB_id=239928 C7M26_RS12710 WP_003246478.1 2425914..2427035(-) (rapF) [Bacillus subtilis strain SRCM102748]
MRAKIPSEEVAVKLNEWYKLIRAFEADQAEALKQEIEYDLEDMEENQDLLLYFSLMEFRHRIMLDKLMPVKDSDTKPPFS
DMLNEIESNQQKLTGLLEYYFYYFRGMYEFKQKNFILAIDHYKHAEEKLEYVEDEIEKAEFLFKVAEVYYHIKQTYFSMN
YASQALDIYTKYELYGRRRVQCEFIIAGNLTDVYHHEKALTHLCSALEHARQLEEAYMIAAAYYNVGHCKYSLGDYKEAE
GYFKTAAAIFEEHNFQQAVQAVFSLTHIYCKEGKYDKAVEAYDRGIKSAAEWEDDMYLTKFRLIHELYLGSGDLNVLTEC
FDLLESRQLLADAEDLLHDTAERFNQLEHYESAAFFYRRLMNIKKKLAEQRFQ

Nucleotide

• Length: 1122 bp

>NTDB_id=239928 C7M26_RS12710 WP_003246478.1 2425914..2427035(-) (rapF) [Bacillus subtilis strain SRCM102748]
ATGAGAGCAAAGATTCCATCAGAAGAAGTAGCAGTAAAGCTGAATGAATGGTACAAGCTCATTCGCGCATTTGAAGCAGA
TCAAGCAGAAGCGTTAAAGCAGGAGATTGAATATGATTTAGAAGATATGGAAGAGAATCAGGACTTGCTTTTATATTTTT
CTTTGATGGAATTCCGGCATCGAATCATGCTTGATAAGCTGATGCCGGTGAAAGACAGCGACACCAAGCCTCCGTTCTCT
GATATGCTGAACGAAATTGAAAGCAATCAGCAAAAACTCACGGGCTTACTGGAATACTACTTTTATTATTTCAGAGGAAT
GTACGAATTCAAGCAGAAAAATTTCATATTAGCGATTGACCATTATAAACATGCCGAGGAAAAGCTCGAGTATGTCGAGG
ATGAGATCGAAAAAGCTGAGTTTCTTTTTAAAGTCGCAGAAGTGTATTATCACATCAAACAAACGTATTTTTCCATGAAT
TATGCGAGCCAGGCGCTTGATATCTATACGAAATATGAACTGTACGGTCGCCGCCGGGTTCAGTGTGAATTTATCATCGC
CGGAAATTTGACCGATGTGTATCATCATGAAAAAGCACTGACCCACTTGTGCAGCGCTTTAGAACATGCCAGGCAGCTTG
AAGAAGCGTACATGATCGCTGCTGCCTATTATAATGTCGGACACTGTAAGTACAGTCTGGGTGATTACAAAGAAGCGGAG
GGCTATTTCAAAACAGCCGCCGCCATTTTTGAGGAGCACAACTTTCAGCAAGCTGTTCAAGCTGTATTTTCACTGACCCA
TATCTACTGTAAAGAGGGAAAATACGACAAGGCAGTAGAGGCTTATGACCGCGGGATAAAGAGCGCGGCTGAATGGGAGG
ATGACATGTACTTGACGAAATTCCGCCTCATTCATGAGCTGTATCTTGGAAGCGGCGACCTGAACGTGCTTACAGAATGC
TTTGACCTGCTGGAATCCAGGCAGCTTCTTGCTGACGCCGAAGATCTGCTGCATGATACAGCGGAACGTTTCAATCAGTT
GGAACATTACGAGTCCGCCGCTTTCTTTTACCGCAGGCTGATGAATATTAAAAAGAAGCTTGCCGAGCAGCGTTTTCAAT
AG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (196-252)

3D structure

• PDB: 4GYO

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.391	98.66	0.418
rapC	Bacillus subtilis subsp. subtilis str. 168	41.257	98.123	0.405