Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CG450_RS22215 Genome accession   NZ_CP022477
Coordinates   4239984..4240274 (+) Length   96 a.a.
NCBI ID   WP_085959887.1    Uniprot ID   -
Organism   Bacillus licheniformis strain BL-010     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4234984..4245274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG450_RS22200 - 4235194..4236519 (-) 1326 WP_003178178.1 G5 and 3D domain-containing protein -
  CG450_RS22205 - 4236636..4237403 (-) 768 WP_017474310.1 TatD family hydrolase -
  CG450_RS22210 metG 4237488..4239476 (-) 1989 WP_017474309.1 methionine--tRNA ligase -
  CG450_RS22215 abrB 4239984..4240274 (+) 291 WP_085959887.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  CG450_RS22220 rsmI 4240323..4241198 (-) 876 WP_025805862.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  CG450_RS22225 - 4241173..4241466 (-) 294 WP_003178169.1 GIY-YIG nuclease family protein -
  CG450_RS22230 - 4241453..4242196 (-) 744 WP_003178166.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  CG450_RS22235 yabA 4242261..4242623 (-) 363 WP_003178164.1 DNA replication initiation control protein YabA -
  CG450_RS22240 - 4242638..4243465 (-) 828 WP_003178162.1 stage 0 sporulation family protein -
  CG450_RS22245 holB 4243468..4244457 (-) 990 WP_003178160.1 DNA polymerase III subunit delta' -
  CG450_RS22250 - 4244469..4244909 (-) 441 WP_003178158.1 YaaR family protein -
  CG450_RS22255 - 4244921..4245250 (-) 330 WP_003178156.1 cyclic-di-AMP receptor -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10680.43 Da        Isoelectric Point: 5.1848

>NTDB_id=239926 CG450_RS22215 WP_085959887.1 4239984..4240274(+) (abrB) [Bacillus licheniformis strain BL-010]
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEG
AEQIINEIQAQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=239926 CG450_RS22215 WP_085959887.1 4239984..4240274(+) (abrB) [Bacillus licheniformis strain BL-010]
ATGAATATGAAATCTACAGGTATTGTACGTAAAGTTGATGAACTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
GCTTGGAATCGCAGAAAAAGACGCTCTTGAAATCTATGTAGATGACGAAAAAATCATCTTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAGGTTTCTGATGACAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGCCCTGAAGGC
GCTGAGCAAATCATTAACGAAATTCAAGCACAACTTCAATCTCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment