Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   C7M26_RS10265 Genome accession   NZ_CP028212
Coordinates   1914526..1915242 (-) Length   238 a.a.
NCBI ID   WP_032723001.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102748     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1909526..1920242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M26_RS10260 (C7M26_02021) hypO 1913721..1914386 (-) 666 WP_014476144.1 NAD(P)H-dependent oxidoreductase -
  C7M26_RS10265 (C7M26_02022) treR 1914526..1915242 (-) 717 WP_032723001.1 trehalose operon repressor Regulator
  C7M26_RS10270 (C7M26_02023) treC 1915263..1916948 (-) 1686 WP_032723000.1 alpha,alpha-phosphotrehalase -
  C7M26_RS10275 (C7M26_02024) treP 1917019..1918431 (-) 1413 WP_032722999.1 PTS system trehalose-specific EIIBC component -
  C7M26_RS10280 (C7M26_02026) yfkQ 1918624..1920165 (+) 1542 Protein_2051 spore germination protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27859.85 Da        Isoelectric Point: 7.1736

>NTDB_id=239913 C7M26_RS10265 WP_032723001.1 1914526..1915242(-) (treR) [Bacillus subtilis strain SRCM102748]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDMWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=239913 C7M26_RS10265 WP_032723001.1 1914526..1915242(-) (treR) [Bacillus subtilis strain SRCM102748]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATGTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTATTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGGTTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(8-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416